Antisense Oligonucleotides Targeting ATXN3

ABSTRACT

The present invention relates to antisense LNA oligonucleotides (oligomers) complementary to ATXN3 pre-mRNA sequences, which are capable of inhibiting the expression of ATXN3 protein. Inhibition of ATXN3 expression is beneficial for the treatment of spinocerebellar ataxia

CROSS REFERENCE TO RELATED APPLICATIONS

This application claims benefit of and priority to the European Patent Application EP 20211612.5 filed on Dec. 3, 2020, all of which are incorporated by reference in their entireties where permissible.

TECHNICAL FIELD OF THE INVENTION

The present invention relates to antisense LNA oligonucleotides (oligomers) complementary to ATXN3 pre-mRNA sequences, which are capable of inhibiting the expression of ATXN3. Inhibition of ATXN3 expression is beneficial for the treatment of spinocerebellar ataxia, such as spinocerebellar ataxia 3 (Machado-Joseph disease (MJD)).

REFERENCE TO SEQUENCE LISTING

The instant application contains a Sequence Listing which has been submitted electronically in ASCII format and is hereby incorporated by reference in its entirety. Said ASCII copy, created on Dec. 3, 2020, is named 067211_013US1_SL.txt and is 613,139 bytes in size.

BACKGROUND OF THE INVENTION

Spinocerebellar ataxia type 3 (SCA3), also known as Machado-Joseph disease (MJD), is one of nine polyglutamine expansion diseases and the most common dominantly inherited ataxia in the world. While certain symptoms in SCA3 may respond to symptomatic therapy, there is still no effective treatment for this relentlessly progressive and fatal neurodegenerative disease. The disease is caused by a CAG repeat expansion in the ATXN3 gene that encodes an abnormally long polyglutamine tract in the disease protein, ATXN3 (Ataxin 3). The toxic ataxin-3 protein is associated with aggregates which are frequently observed in the brain tissue of SCA3 patients.

Moore et al. reported that antisense oligonucleotides (ASOs) targeting ATXN3 were capable of reducing levels of the pathogenic ATXN3 protein both in human disease fibroblasts and in a mouse model expressing the full-length human mutant ATXN3 gene (Moore et al., Mol Ther Nucleic Acids. 2017; 7:200-210). Therefore, ASO-mediated targeting of ATXN3 was suggested as therapeutic approach for SCA3.

Swayze et al. (Nucleic Acids Res. 2007; 35(2):687-700. Epub 2006 Dec. 19), reports that antisense oligonucleotides containing locked nucleic acid have the potential to improve potency but cause significant toxicity in animals (hepatotoxicity).

Toonen et al. used antisense oligonucleotides to mask predicted exonic splicing signals of ATXN3, resulting in exon 10 skipping from ATXN3 pre-mRNA. The skipping of exon 10 led to formation of a truncated ataxin-3 protein lacking the toxic polyglutamine expansion, but retaining its ubiquitin binding and cleavage function (Toonen et al., Molecular Therapy—Nucleic Acids, 2017, Volume 8: 232-242).

WO2013/138353, WO2015/017675, WO2018/089805, WO2019/217708 and WO2020/172559 disclose antisense oligonucleotides targeting human ATXN3 mRNA for use in the treatment of SCA3.

SUMMARY OF THE INVENTION

The present invention identifies regions of the ATXN3 transcript (ATXN3) for antisense inhibition in vitro or in vivo, and provides for antisense oligonucleotides, including LNA gapmer oligonucleotides, which target these regions of the ATXN3 pre-mRNA or mature mRNA. Particularly, the present invention identifies antisense oligonucleotides which target human ATXN3 pre-mRNA or mature mRNA more effectively than they target the human Potassium Voltage-Gated Channel Subfamily B Member 2 (KCNB2) pre-mRNA or mature mRNA. The present invention identifies oligonucleotides which inhibit human ATXN3 which are useful in the treatment of spinocerebellar ataxia.

The invention provides for an antisense oligonucleotide, 10-30 nucleotides in length, targeting a mammalian ATXN3 (Ataxin 3) target nucleic acid, wherein the antisense oligonucleotide is capable of inhibiting the expression of mammalian ATXN3 in a cell which is expressing mammalian ATXN3. The mammalian ATXN3 target nucleic acid may be, e.g., a human, monkey or mouse ATXN3 target nucleic acid.

The invention also provides for an LNA gapmer antisense oligonucleotide, 10-30 nucleotides in length, wherein said antisense oligonucleotide comprises a contiguous nucleotide sequence 10-30 nucleotides in length, wherein the contiguous nucleotide sequence is at least 90% complementary, such as fully complementary, to SEQ ID NO:1, wherein the antisense oligonucleotide is capable of inhibiting the expression of human ATXN3 in a cell which is expressing human ATXN3.

In one aspect, the invention provides for an antisense oligonucleotide comprising a contiguous nucleotide sequence comprising the contiguous nucleotides present in SEQ ID NO:1122 except for one or more modified nucleosides and/or one or more modified internucleoside linkages, wherein the antisense oligonucleotide is capable of inhibiting the expression of human ATXN3 in a cell which is expressing human ATXN3; or a pharmaceutically acceptable salt thereof. In some embodiments, the antisense oligonucleotide is more capable of inhibiting the expression of human ATXN3 than human KCNB2 in a cell which is expressing human ATXN3 and human KCNB2. In some embodiments, the one or more modified nucleosides and/or one or more modified internucleoside linkages are, for each residue in SEQ ID NO:1122, independently selected from the options for that residue as shown in Table 15.

In some embodiments, the antisense oligonucleotide comprises a contiguous nucleotide sequence comprising at least 10, such as at least 12, such as at least 14, such as at least 16 contiguous nucleotides present in SEQ ID NO:1122. In some embodiments, the antisense oligonucleotide comprises the contiguous nucleotide sequence of SEQ ID NO: 1122.

In some embodiments, the antisense oligonucleotide comprises a contiguous nucleotide sequence comprising the base sequence of an antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1122_82 to 1122_406, shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises a contiguous nucleotide sequence comprising the nucleoside base sequence and, optionally, the sugar moiety modifications, of an antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1122_91, 1122_107, 1122_154, 1122_155, 1122_156, 1122_157, 1122_158, 1122_167, 1122_172, 1122_175, 1122_294, 1122_296, 1122_359, 1122_384 and 1122_385, shown in Table 14.

In some embodiments, the antisense oligonucleotide is an LNA gapmer antisense oligonucleotide; or a pharmaceutically acceptable salt thereof. Typically, each LNA cytosine is an LNA 5-methyl cytosine.

In some embodiments, substantially all, or all, internucleoside linkages between the nucleosides are phosphorothioate internucleoside linkages. In some particular embodiments, one or more of the phosphothioate internucleoside linkages are stereodefined.

In some embodiments, one or more nucleosides are also or alternatively modified to a 2′-sugar-modified nucleoside.

In some embodiments, one or more cytosine nucleosides are also or alternatively modified to a 5-methyl cytosine nucleoside.

In some embodiments, one or more thymine nucleosides are modified to a uracil nucleoside.

In one aspect, the invention provides for an antisense oligonucleotide comprising a contiguous nucleotide sequence comprising the contiguous nucleotides present in SEQ ID NO:1816 except for one or more modified nucleosides and/or one or more modified internucleoside linkages, wherein the antisense oligonucleotide is capable of inhibiting the expression of human ATXN3 in a cell which is expressing human ATXN3; or a pharmaceutically acceptable salt thereof. In some embodiments, the antisense oligonucleotide is more capable of inhibiting the expression of human ATXN3 than human KCNB2 in a cell which is expressing human ATXN3 and human KCNB2. In some embodiments, the one or more modified nucleosides and/or one or more modified internucleoside linkages are, for each residue in SEQ ID NO:1816, independently selected from the options for that residue as shown in Table 16.

In some embodiments, the antisense oligonucleotide comprises a contiguous nucleotide sequence comprising at least 10, such as at least 12, such as at least 14, such as at least 16 contiguous nucleotides present in SEQ ID NO:1816. In some embodiments, the antisense oligonucleotide comprises the contiguous nucleotide sequence of SEQ ID NO: 1816.

In some embodiments, the antisense oligonucleotide comprises a contiguous nucleotide sequence comprising the base sequence of an antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1816_2 to 1816_92, shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises the nucleoside base sequence and, optionally, the sugar moiety modifications, of an antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1816_13, 1816_15, 1816_28, 1816_41, 1816_42, 1816_43, 1816_60, 1816_61, 1816_64, 1816_65, 1816_68, and 1816_92, as shown in Table 14.

In some embodiments, the antisense oligonucleotide is an LNA gapmer antisense oligonucleotide; or a pharmaceutically acceptable salt thereof. Typically, each LNA cytosine is an LNA 5-methyl cytosine.

In some embodiments, substantially all, or all, internucleoside linkages between the nucleosides are phosphorothioate internucleoside linkages. In some particular embodiments, one or more of the phosphothioate internucleoside linkages are stereodefined.

In some embodiments, one or more nucleosides are also or alternatively modified to a 2′-sugar-modified nucleoside.

In some embodiments, one or more cytosine nucleosides are also or alternatively modified to a 5-methyl cytosine nucleoside.

In some embodiments, one or more thymine nucleosides are modified to a uracil nucleoside.

More details on these or other nucleoside modifications and/or internucleoside linkage modifications are provided in the present disclosure.

In one aspect, the invention provides for the antisense oligonucleotides disclosed herein, for example an antisense oligonucleotide selected from the group consisting of the compounds shown in the table in Example 13; or a pharmaceutically acceptable salt thereof.

In one aspect, the invention provides for the antisense oligonucleotide disclosed herein, for example an antisense oligonucleotide selected from the group consisting of the compounds shown in Table 11; or a pharmaceutically acceptable salt thereof.

In some embodiments, the antisense oligonucleotide is selected from the group consisting of the compounds shown in the table in Example 16.

In some embodiments, the antisense oligonucleotide is selected from the group consisting of the compounds shown in Table 14.

In one aspect, the invention particularly provides for an antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1122_91, 1122_107, 1122_154, 1122_155, 1122_156, 1122_157, 1122_158, 1122_167, 1122_172, 1122_175, 1122_294, 1122_296, 1122_359, 1122_384, 1122_385, 1816_13, 1816_15, 1816_28, 1816_41, 1816_42, 1816_43, 1816_60, 1816_61, 1816_64, 1816_65, 1816_68, and 1816_92; or a pharmaceutically acceptable salt thereof.

In separate and specific aspects, the invention provides for an antisense oligonucleotide as shown in FIG. 12A, 12B, 12C, 12D, 12E, 12F, 12G, 12H, 12I, 12J, 12K, 12L, 12M, 12N, 12O, 12P, 12Q, 12R, 12S, 12T, 12U, 12V, 12W, 12X, 12Y, 12Z or 12AA; or a pharmaceutically acceptable salt thereof.

An oligonucleotide of the invention as referred to or claimed herein may be in the form of a pharmaceutically acceptable salt, such as a sodium or potassium salt.

In one aspect, the invention provides for a conjugate comprising an oligonucleotide according to the invention, and at least one conjugate moiety covalently attached to said oligonucleotide.

In one aspect, the invention provides for a pharmaceutical composition comprising the oligonucleotide or conjugate of the invention and a pharmaceutically acceptable diluent, solvent, carrier, salt and/or adjuvant.

In one aspect, the invention provides for an in vivo or in vitro method for modulating ATXN3 expression in a target cell which is expressing ATXN3, said method comprising administering an oligonucleotide or conjugate or pharmaceutical composition of the invention in an effective amount to said cell.

In one aspect, the invention provides for a method for treating or preventing a disease comprising administering a therapeutically or prophylactically effective amount of an oligonucleotide, conjugate or the pharmaceutical composition of the invention to a subject suffering from or susceptible to the disease.

In some embodiments, the disease is spinocerebellar ataxia, such as spinocerebellar ataxia 3, such as Machado-Joseph disease (MJD).

In one aspect, the invention provides for the oligonucleotide, conjugate or the pharmaceutical composition of the invention for use in medicine.

In one aspect, the invention provides for the oligonucleotide, conjugate or the pharmaceutical composition of the invention for use in the treatment or prevention of spinocerebellar ataxia, such as spinocerebellar ataxia 3, such as Machado-Joseph disease (MJD).

In one aspect, the invention provides for the use of the oligonucleotide, conjugate or the pharmaceutical composition of the invention, for the preparation of a medicament for treatment or prevention of spinocerebellar ataxia, such as spinocerebellar ataxia 3 such as Machado-Joseph disease (MJD).

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 displays a drawing of the compound 1122_67 (SEQ ID NO:1122).

FIG. 2 displays a drawing of the compound 1813_1 (SEQ ID NO:1813).

FIG. 3 displays a drawing of the compound 1856_1 (SEQ ID NO:1856).

FIG. 4 displays a drawing of the compound 1812_1 (SEQ ID NO:1812).

FIG. 5 displays a drawing of the compound 1809_2 (SEQ ID NO:1809).

FIG. 6 displays a drawing of the compound 1607_1 (SEQ ID NO:1607).

FIG. 7 displays a drawing of the compound 1122_62 (SEQ ID NO:1122).

FIG. 8 displays a drawing of the compound 1122_33 (SEQ ID NO:1122).

FIG. 9 portrays the stability of the compounds 1122_67 and 18131, and 5 reference compounds (i.e. compounds 1100673, 1101657, 1102130, 1103014, and 1102987) in a 24 hour SVPD assay.

FIG. 10A displays a WES analysis of GM06153 cells treated with different ASOs to obtain reduction of wild type Ataxin 3 (55 kDa) and polyQ extended Ataxin 3 (77 kDa). FIG. 10B displays an analysis of band intensity normalized to HPRT. Wild type Ataxin 3 is represented by the band at 55 kDa, and the polyQ extended Ataxin 3 is represented by the band at 77 kDa. Cells have been treated with 10 uM of ASO for 4 days prior to protein analysis. Data represents cells treated with ASOs in triplicates as mean+−SD. SC, scrambled control oligo.

FIG. 11 displays a drawing of the compound 1816_12.

FIGS. 12A-12AA display drawings of the compounds in Table 14 (Example 16). FIG. 12A displays a drawing of the compound 1122_91. FIG. 12B displays a drawing of the compound 1122_107. FIG. 12C displays a drawing of the compound 1122_154. FIG. 12D displays a drawing of the compound 1122_155. FIG. 12E displays a drawing of the compound 1122_156. FIG. 12F displays a drawing of the compound 1122_157. FIG. 12G displays a drawing of the compound 1122_158. FIG. 12H displays a drawing of the compound 1122_167. FIG. 12I displays a drawing of the compound 1122_172. FIG. 12J displays a drawing of the compound 1122_175. FIG. 12K displays a drawing of the compound 1122_294. FIG. 12L displays a drawing of the compound 1122_296. FIG. 12M displays a drawing of the compound 1122_359. FIG. 12N displays a drawing of the compound 1122_384. FIG. 12O displays a drawing of the compound 1122_385. FIG. 12P displays a drawing of the compound 1816_13. FIG. 12Q displays a drawing of the compound 1816_15. FIG. 12R displays a drawing of the compound 1816_28. FIG. 12S displays a drawing of the compound 1816_41. FIG. 12T displays a drawing of the compound 1816_42. FIG. 12U displays a drawing of the compound 1816_43. FIG. 12V displays a drawing of the compound 1816_60. FIG. 12W displays a drawing of the compound 1816_61. FIG. 12X displays a drawing of the compound 1816_64. FIG. 12Y displays a drawing of the compound 1816_65. FIG. 12Z displays a drawing of the compound 1816_68. FIG. 12AA displays a drawing of the compound 1816_92.

The chemical drawings show the protonated form of the antisense oligonucleotide, and it will be understood that each hydrogen on the sulphur atom in the phosphorothioate internucleoside linkage may independently be present or absent. In a salt form, one or more more of the hydrogens may for example be replaced with a cation, such as a metal cation, such as a sodium cation or a potassium cation.

DETAILED DESCRIPTION OF THE INVENTION I. Definitions

It should be appreciated that this disclosure is not limited to the compositions and methods described herein as well as the experimental conditions described, as such may vary. It is also to be understood that the terminology used herein is for the purpose of describing certain embodiments only, and is not intended to be limiting, since the scope of the present disclosure will be limited only by the appended claims.

Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure belongs. Although any compositions, methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention. All publications mentioned are incorporated herein by reference in their entirety.

The use of the terms “a,” “an,” “the,” and similar referents in the context of describing the presently claimed invention (especially in the context of the claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by context.

Recitation of ranges of values herein are merely intended to serve as a shorthand method of referring individually to each separate value falling within the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein.

Use of the term “about” is intended to describe values either above or below the stated value in a range of approx. +/−10%; in other embodiments the values may range in value either above or below the stated value in a range of approx. +/−5%; in other embodiments the values may range in value either above or below the stated value in a range of approx. +/−2%; in other embodiments the values may range in value either above or below the stated value in a range of approx. +/−1%. The preceding ranges are intended to be made clear by context, and no further limitation is implied. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g., “such as”) provided herein, is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention unless otherwise claimed. No language in the specification should be construed as indicating any non-claimed element as essential to the practice of the invention.

As used herein, the terms “treat,” “treating,” “treatment” and “therapeutic use” refer to the elimination, reduction or amelioration of one or more symptoms of a disease or disorder. Specifically, the term “treatment” may refer to both treatment of an existing disease (e.g. a disease or disorder as herein referred to), or prevention of a disease (i.e. prophylaxis). It will therefore be recognized that treatment as referred to herein may, in some embodiments, be prophylactic. As used herein, a “therapeutically effective amount” refers to that amount of a therapeutic agent sufficient to mediate a clinically relevant elimination, reduction or amelioration of such symptoms. An effect is clinically relevant if its magnitude is sufficient to impact the health or prognosis of a recipient subject. A therapeutically effective amount may refer to the amount of therapeutic agent sufficient to delay or minimize the onset of disease. A therapeutically effective amount may also refer to the amount of the therapeutic agent that provides a therapeutic benefit in the treatment or management of a disease.

The term “oligonucleotide” as used herein is defined as it is generally understood by the skilled person as a molecule comprising two or more covalently linked nucleosides. Such covalently bound nucleosides may also be referred to as nucleic acid molecules or oligomers. Oligonucleotides are commonly made in the laboratory by solid-phase chemical synthesis followed by purification. When referring to a sequence of the oligonucleotide, reference is made to the sequence or order of nucleobase moieties, or modifications thereof, of the covalently linked nucleotides or nucleosides. The oligonucleotide of the invention is man-made, and is chemically synthesized, and is typically purified or isolated. The oligonucleotide of the invention may comprise one or more modified nucleosides or nucleotides.

The term “Antisense oligonucleotide” as used herein is defined as oligonucleotides capable of modulating expression of a target gene by hybridizing to a target nucleic acid, in particular to a contiguous sequence on a target nucleic acid. The antisense oligonucleotides are not essentially double stranded and are therefore not siRNAs or shRNAs. Preferably, the antisense oligonucleotides of the present invention are single stranded. It is understood that single stranded oligonucleotides of the present invention can form hairpins or intermolecular duplex structures (duplex between two molecules of the same oligonucleotide), as long as the degree of intra or inter self-complementarity is less than 50% across of the full length of the oligonucleotide.

The term “contiguous nucleotide sequence” refers to the region of the oligonucleotide which is complementary to the target nucleic acid. The term is used interchangeably herein with the term “contiguous nucleobase sequence” and the term “oligonucleotide motif sequence” also referred to as “motif sequence”. The “motif sequence” may also be referred to as the “Oligonucleotide Base Sequence”. In some embodiments all the nucleotides of the oligonucleotide constitute the contiguous nucleotide sequence. In some embodiments the oligonucleotide comprises the contiguous nucleotide sequence, such as a F-G-F′ gapmer region, and may optionally comprise further nucleotide(s), for example a nucleotide linker region which may be used to attach a functional group to the contiguous nucleotide sequence. The nucleotide linker region may or may not be complementary to the target nucleic acid. Advantageously, the contiguous nucleotide sequence is 100% complementary to the target nucleic acid.

The term “modified oligonucleotide” describes an oligonucleotide comprising one or more modified nucleosides and/or modified internucleoside linkages. The term chimeric” oligonucleotide is a term that has been used in the literature to describe oligonucleotides with modified nucleosides.

The term “nucleotides” refers to the building blocks of oligonucleotides and polynucleotides, and for the purposes of the present invention include both naturally occurring and non-naturally occurring nucleotides. In nature, nucleotides, such as DNA and RNA nucleotides comprise a ribose sugar moiety, a nucleobase moiety and one or more phosphate groups (which is absent in nucleosides). Nucleosides and nucleotides may also interchangeably be referred to as “units” or “monomers”.

The term “nucleobase” refers to the purine (e.g. adenine and guanine) and pyrimidine (e.g. uracil, thymine and cytosine) moieties present in nucleosides and nucleotides which form hydrogen bonds in nucleic acid hybridization. In the context of the present invention the term nucleobase also encompasses modified nucleobases which may differ from naturally occurring nucleobases, but are functional during nucleic acid hybridization. In this context “nucleobase” refers to both naturally occurring nucleobases such as adenine, guanine, cytosine, thymidine, uracil, xanthine and hypoxanthine, as well as non-naturally occurring variants. Such variants are for example described in Hirao et al (2012) Accounts of Chemical Research vol 45 page 2055 and Bergstrom (2009) Current Protocols in Nucleic Acid Chemistry Suppl. 37 1.4.1.

In some embodiments, the “nucleobase moiety” is modified by changing the purine or pyrimidine into a modified purine or pyrimidine, such as substituted purine or substituted pyrimidine, such as a nucleobased selected from isocytosine, pseudoisocytosine, 5-methyl cytosine, 5-thiozolo-cytosine, 5-propynyl-cytosine, 5-propynyl-uracil, 5-bromouracil 5-thiazolo-uracil, 2-thio-uracil, 2′thio-thymine, inosine, diaminopurine, 6-aminopurine, 2-aminopurine, 2,6-diaminopurine and 2-chloro-6-aminopurine.

The nucleobase moieties may be indicated by the letter code for each corresponding nucleobase, e.g. A, T, G, C or U, wherein each letter may optionally include modified nucleobases of equivalent function. For example, in the exemplified oligonucleotides, the nucleobase moieties are selected from A, T, G, C, and 5-methyl cytosine. Optionally, for LNA gapmers, 5-methyl cytosine LNA nucleosides may be used.

The term “modified nucleoside” or “nucleoside modification” as used herein refers to nucleosides modified as compared to the equivalent DNA or RNA nucleoside by the introduction of one or more modifications of the sugar moiety or the (nucleo)base moiety. In a preferred embodiment, the modified nucleoside comprises a modified sugar moiety. The term modified nucleoside may also be used herein interchangeably with the term “nucleoside analogue” or modified “units” or modified “monomers”. Nucleosides with an unmodified DNA or RNA sugar moiety are termed DNA or RNA nucleosides herein. Nucleosides with modifications in the base region of the DNA or RNA nucleoside are still generally termed DNA or RNA if they allow Watson Crick base pairing.

The oligomer of the invention may comprise one or more nucleosides which have a modified sugar moiety, i.e. a modification of the sugar moiety when compared to the ribose sugar moiety found in DNA and RNA.

Numerous nucleosides with modification of the ribose sugar moiety have been made, primarily with the aim of improving certain properties of oligonucleotides, such as affinity and/or nuclease resistance.

Such modifications include those where the ribose ring structure is modified, e.g. by replacement with a hexose ring (HNA), or a bicyclic ring, which typically have a biradicle bridge between the C2 and C4 carbons on the ribose ring (LNA), or an unlinked ribose ring which typically lacks a bond between the C2 and C3 carbons (e.g. UNA). Other sugar modified nucleosides include, for example, bicyclohexose nucleic acids (WO2011/017521) or tricyclic nucleic acids (WO2013/154798). Modified nucleosides also include nucleosides where the sugar moiety is replaced with a non-sugar moiety, for example in the case of peptide nucleic acids (PNA), or morpholino nucleic acids.

As used herein, “sugar modifications” also include modifications made via altering the substituent groups on the ribose ring to groups other than hydrogen, or the 2′—OH group naturally found in DNA and RNA nucleosides. Substituents may, for example be introduced at the 2′, 3′, 4′ or 5′ positions.

As used herein, a “2′ sugar modified nucleoside” refers to a nucleoside which has a substituent other than H or —OH at the 2′ position (2′ substituted nucleoside) or comprises a 2′ linked biradicle capable of forming a bridge between the 2′ carbon and a second carbon in the ribose ring, such as LNA (2′-4′ biradicle bridged) nucleosides.

Indeed, much focus has been spent on developing 2′ substituted nucleosides, and numerous 2′ substituted nucleosides have been found to have beneficial properties when incorporated into oligonucleotides. For example, the 2′ modified sugar may provide enhanced binding affinity and/or increased nuclease resistance to the oligonucleotide. Examples of 2′ substituted modified nucleosides are 2′-O-alkyl-RNA, 2′-O-methyl-RNA, 2′-alkoxy-RNA, 2′-O-methoxyethyl-RNA (MOE), 2′-amino-DNA, 2′-Fluoro-RNA, and 2′-F-ANA nucleoside. For further examples, please see e.g. Freier & Altmann; Nucl. Acid Res., 1997, 25, 4429-4443 and Uhlmann; Curr. Opinion in Drug Development, 2000, 3(2), 293-213, and Deleavey and Damha, Chemistry and Biology 2012, 19, 937. Below are illustrations of some 2′ substituted modified nucleosides.

In relation to the present invention 2′ substituted does not include 2′ bridged molecules like LNA.

As used herein, a “Locked Nucleic Acid (LNA) nucleoside” is a 2′-modified nucleoside which comprises a biradical linking the C2′ and C4′ of the ribose sugar ring of said nucleoside (also referred to as a “2′-4′ bridge”), which restricts or locks the conformation of the ribose ring. These nucleosides are also termed bridged nucleic acid or bicyclic nucleic acid (BNA) in the literature. The locking of the conformation of the ribose is associated with an enhanced affinity of hybridization (duplex stabilization) when the LNA is incorporated into an oligonucleotide for a complementary RNA or DNA molecule. This can be routinely determined by measuring the melting temperature of the oligonucleotide/complement duplex.

Non limiting, exemplary LNA nucleosides are disclosed in WO 99/014226, WO 00/66604, WO 98/039352, WO 2004/046160, WO 00/047599, WO 2007/134181, WO 2010/077578, WO 2010/036698, WO 2007/090071, WO 2009/006478, WO 2011/156202, WO 2008/154401, WO 2009/067647, WO 2008/150729, Morita et al., Bioorganic & Med. Chem. Lett. 12, 73-76, Seth et al. J. Org. Chem. 2010, Vol 75(5) pp. 1569-81, and Mitsuoka et al., Nucleic Acids Research 2009, 37(4), 1225-1238, and Wan and Seth, J. Medical Chemistry 2016, 59, 9645-9667.

Further non limiting, exemplary LNA nucleosides are disclosed in Scheme 1:

Particular LNA nucleosides are beta-D-oxy-LNA, 6′-methyl-beta-D-oxy LNA such as (S)-6′-methyl-beta-D-oxy-LNA (ScET) and ENA. A particularly advantageous LNA is beta-D-oxy-LNA.

As used herein, the term “modified internucleoside linkage” is defined as generally understood by the skilled person as linkages other than phosphodiester (PO) linkages, that covalently couples two nucleosides together. The oligonucleotides of the invention may therefore comprise modified internucleoside linkages. In some embodiments, the modified internucleoside linkage increases the nuclease resistance of the oligonucleotide compared to a phosphodiester linkage. For naturally occurring oligonucleotides, the internucleoside linkage includes phosphate groups creating a phosphodiester bond between adjacent nucleosides. Modified internucleoside linkages are particularly useful in stabilizing oligonucleotides for in vivo use, and may serve to protect against nuclease cleavage at regions of DNA or RNA nucleosides in the oligonucleotide of the invention, for example within the gap region of a gapmer oligonucleotide, as well as in regions of modified nucleosides, such as region F and F′.

In an embodiment, the oligonucleotide comprises one or more internucleoside linkages modified from the natural phosphodiester, such one or more modified internucleoside linkages that is for example more resistant to nuclease attack. Nuclease resistance may be determined by incubating the oligonucleotide in blood serum or by using a nuclease resistance assay (e.g. snake venom phosphodiesterase (SVPD)), both are well known in the art. Internucleoside linkages which are capable of enhancing the nuclease resistance of an oligonucleotide are referred to as nuclease resistant internucleoside linkages. In some embodiments at least 50% of the internucleoside linkages in the oligonucleotide, or contiguous nucleotide sequence thereof, are modified, such as at least 60%, such as at least 70%, such as at least 80 or such as at least 90% of the internucleoside linkages in the oligonucleotide, or contiguous nucleotide sequence thereof, are nuclease resistant internucleoside linkages. In some embodiments all of the internucleoside linkages of the oligonucleotide, or contiguous nucleotide sequence thereof, are nuclease resistant internucleoside linkages. It will be recognized that, in some embodiments the nucleosides which link the oligonucleotide of the invention to a non-nucleotide functional group, such as a conjugate, may be phosphodiester.

Particular examples of modified internucleoside linkages include phosphorothioate internucleoside linkages, stereodefined phosphorothioate linkages, 3-methoxypropylphosphonothioate (MOPS) internucleoside linkages and 3-methoxypropylphosphonate (MOPO) internucleoside linkages. MOPS and MOPO internucleoside linkages are illustrated below, where “B” represents the nucleobase. R¹ may represent the linkage to a 3′—OH group, unless it is placed at the 3′-end of an oligonucleotide. R² and R³ represent other optional sugar modifications described herein, and may, e.g., form the bridge in an LNA nucleoside or represent cET or hydrogen (H). For further details on MOPS and MOPO linkages, see Migawa et al., Nucleic Acids Research, Volume 47, Issue 11, 20 Jun. 2019, Pages 5465-5479.

A preferred modified internucleoside linkage is phosphorothioate. Phosphorothioate internucleoside linkages are particularly useful due to nuclease resistance, beneficial pharmacokinetics and ease of manufacture. In some embodiments at least 50% of the internucleoside linkages in the oligonucleotide, or contiguous nucleotide sequence thereof, are phosphorothioate, such as at least 60%, such as at least 70%, such as at least 80% or such as at least 90% of the internucleoside linkages in the oligonucleotide, or contiguous nucleotide sequence thereof, are phosphorothioate. In some embodiments all of the internucleoside linkages of the oligonucleotide, or contiguous nucleotide sequence thereof, are phosphorothioate.

Nuclease resistant linkages, such as phosphorothioate linkages, are particularly useful in oligonucleotide regions capable of recruiting nuclease when forming a duplex with the target nucleic acid, such as region G for gapmers. Phosphorothioate linkages may, however, also be useful in non-nuclease recruiting regions and/or affinity enhancing regions such as regions F and F′ for gapmers. Gapmer oligonucleotides may, in some embodiments comprise one or more phosphodiester linkages in region F or F′, or both region F and F′, which the internucleoside linkage in region G may be fully phosphorothioate.

Advantageously, all the internucleoside linkages in the contiguous nucleotide sequence of the oligonucleotide are phosphorothioate linkages.

It is recognized that, as disclosed in EP2 742 135, antisense oligonucleotide may comprise other internucleoside linkages (other than phosphodiester and phosphorothioate), for example alkyl phosphonate/methyl phosphonate internucleosides, which according to EP2 742 135 may for example be tolerated in an otherwise DNA phosphorothioate gap region.

As used herein, “phosphorothioate linkages” refer to internucleoside phosphate linkages where one of the non-bridging oxygens has been substituted with a sulfur. The substitution of one of the non-bridging oxygens with a sulfur introduces a chiral center, and as such within a single phosphorothioate oligonucleotide, each phosphorothioate internucleoside linkage will be either in the S (Sp) or R (Rp) stereoisoforms. Such internucleoside linkages are referred to as “chiral internucleoside linkages”. By comparison, phosphodiester internucleoside linkages are non-chiral as they have two non-terminal oxygen atoms.

The designation of the chirality of a stereocenter is determined by standard Cahn-Ingold-Prelog rules (CIP priority rules) first published in Cahn, R. S.; Ingold, C. K.; Prelog, V. (1966). “Specification of Molecular Chirality”. Angewandte Chemie International Edition. 5 (4): 385-415. doi:10.1002/anie.196603851.

During standard oligonucleotide synthesis, the stereoselectivity of the coupling and the following sulfurization is not controlled. For this reason, when producing an oligonucleotide by standard oligonucleotide synthetic methods, the stereoconfiguration of any specific phosphorothioate internucleoside linkage introduced may become either Sp or Rp. The resulting preparation of such an oligonucleotide may therefore contain as many as 2^(X) different individual phosphorothioate diastereoisomers, where X is the number of phosphorothioate internucleoside linkages. Such oligonucleotides are referred to as “stereorandom phosphorothioate oligonucleotides” herein, and do not contain any stereodefined internucleoside linkages. Stereorandom phosphorothioate oligonucleotides are therefore mixtures of individual diastereoisomers originating from the non-stereodefined synthesis. In this context the mixture is defined as up to 2^(X) different phosphorothioate diastereoisomers. A stereorandom phosphorothioate internucleoside linkage may also be referred to as a stereo-undefined phosphorothioate internucleoside linkage or, using HELM-annotations, [sP] or (abbreviated) “X”, herein (see Examples 13 and 16).

As used herein, a “stereodefined internucleoside linkage” refers to an internucleoside linkage which introduces a specific chiral center into the oligonucleotide, which exists in predominantly one stereoisomeric form, either R or S within a population of individual oligonucleotide molecules.

It should be recognized that stereoselective oligonucleotide synthesis methods used in the art typically provide at least about 90% or at least about 95% stereoselectivity at each internucleoside linkage stereocenter, and as such up to about 10%, such as about 5% of oligonucleotide molecules may have the alternative stereo isomeric form.

In some embodiments the stereoselectivity of each stereodefined phosphorothioate stereocenter is at least about 90%. In some embodiments the stereoselectivity of each stereodefined phosphorothioate stereocenter is at least about 95%.

As used herein, “stereodefined phosphorothioate linkages” refer to phosphorothioate linkages which have been chemically synthesized in either the Rp or Sp configuration within a population of individual oligonucleotide molecules, such as at least about 90% or at least about 95% stereoselectivity at each stereocenter (either Rp or Sp), and as such up to about 10%, such as about 5% of oligonucleotide molecules may have the alternative stereo isomeric form. The stereo configurations of the phosphorothioate internucleoside linkages are presented below

where the 3′ R group represents the 3′ position of the adjacent nucleoside (a 5′ nucleoside), and the 5′ R group represents the 5′ position of the adjacent nucleoside (a 3′ nucleoside).

Rp internucleoside linkages may also be represented as srP, and Sp internucleoside linkages may be represented as ssP herein. Using HELM annotations, a stereodefined Sp phosphorothioate internucleoside linkage may also be referred to as [ssP] or abbreviated as “S” herein (see Examples 13 and 16).

In some embodiments the stereoselectivity of each stereodefined phosphorothioate stereocenter is at least about 97%. In some embodiments the stereoselectivity of each stereodefined phosphorothioate stereocenter is at least about 98%. In some embodiments the stereoselectivity of each stereodefined phosphorothioate stereocenter is at least about 99%.

In some embodiments a stereoselective internucleoside linkage is in the same stereoisomeric form in at least 97%, such as at least 98%, such as at least 99%, or (essentially) all of the oligonucleotide molecules present in a population of the oligonucleotide molecule.

Stereoselectivity can be measured in a model system only having an achiral backbone (i.e. phosphodiesters) it is possible to measure the stereoselectivity of each monomer by e.g. coupling a stereodefined monomer to the following model-system “5′ t-po-t-po-t-po 3”. The result of this will then give: 5′ DMTr-t-srp-t-po-t-po-t-po 3′ or 5′ DMTr-t-ssp-t-po-t-po-t-po 3′ which can be separated using HPLC. The stereoselectivity is determined by integrating the UV signal from the two possible compounds and giving a ratio of these e.g. 98:2, 99:1 or >99:1.

It will be understood that the stereo % purity of a specific single diastereoisomer (a single stereodefined oligonucleotide molecule) will be a function of the coupling selectivity for the defined stereocenter at each internucleoside position, and the number of stereodefined internucleoside linkages to be introduced. By way of example, if the coupling selectivity at each position is 97%, the resulting purity of the stereodefined oligonucleotide with 15 stereodefined internucleoside linkages will be 0.97¹⁵, i.e. 63% of the desired diastereoisomer as compared to 37% of the other diastereoisomers. The purity of the defined diastereoisomer may after synthesis be improved by purification, for example by HPLC, such as ion exchange chromatography or reverse phase chromatography.

In some embodiments, a stereodefined oligonucleotide refers to a population of an oligonucleotide wherein at least about 40%, such as at least about 50% of the population is of the desired diastereoisomer.

Alternatively stated, in some embodiments, a stereodefined oligonucleotide refers to a population of oligonucleotides wherein at least about 40%, such as at least about 50%, of the population consists of the desired (specific) stereodefined internucleoside linkage motif (also termed stereodefined motif).

For stereodefined oligonucleotides which comprise both stereorandom and stereodefined internucleoside stereocenters, the purity of the stereodefined oligonucleotide is determined with reference to the % of the population of the oligonucleotide which retains the defined stereodefined internucleoside linkage motif(s), the stereorandom linkages are disregarded in the calculation.

As used herein, a “stereodefined oligonucleotide” refers to an oligonucleotide wherein at least one of the internucleoside linkages is a stereodefined internucleoside linkage.

As used herein, a “stereodefined phosphorothioate oligonucleotide” refers to an oligonucleotide wherein at least one of the internucleoside linkages is a stereodefined phosphorothioate internucleoside linkage.

As used herein, the term “complementarity” describes the capacity for Watson-Crick base-pairing of nucleosides/nucleotides. Watson-Crick base pairs are guanine (G)-cytosine (C) and adenine (A)—thymine (T)/uracil (U). It will be understood that oligonucleotides may comprise nucleosides with modified nucleobases, for example 5-methyl cytosine is often used in place of cytosine, and as such the term complementarity encompasses Watson Crick base-paring between non-modified and modified nucleobases (see for example Hirao et al (2012) Accounts of Chemical Research vol 45 page 2055 and Bergstrom (2009) Current Protocols in Nucleic Acid Chemistry Suppl. 37 1.4.1).

As used herein, the term “% complementary” refers to the number of nucleotides in percent of a contiguous nucleotide sequence in a nucleic acid molecule (e.g. oligonucleotide) which, at a given position, are complementary to (i.e. form Watson Crick base pairs with) a contiguous sequence of nucleotides, at a given position of a separate nucleic acid molecule (e.g. the target nucleic acid or target sequence). The percentage is calculated by counting the number of aligned bases that form pairs between the two sequences (when aligned with the target sequence 5′-3′ and the oligonucleotide sequence from 3′-5′), dividing by the total number of nucleotides in the oligonucleotide and multiplying by 100. In such a comparison a nucleobase/nucleotide which does not align (form a base pair) is termed a mismatch. Preferably, insertions and deletions are not allowed in the calculation of % complementarity of a contiguous nucleotide sequence.

As used herein, the term “fully complementary” refers to 100% complementarity.

As used herein, the term “identity” refers to the proportion of nucleotides (expressed in percent) of a contiguous nucleotide sequence in a nucleic acid molecule (e.g. oligonucleotide) which across the contiguous nucleotide sequence, are identical to a reference sequence (e.g. a sequence motif). The percentage of identity is thus calculated by counting the number of aligned bases that are identical (a match) between two sequences (e.g. in the contiguous nucleotide sequence of the compound of the invention and in the reference sequence), dividing that number by the total number of nucleotides in the aligned region and multiplying by 100. Therefore, Percentage of Identity=(Matches×100)/Length of aligned region (e.g. the contiguous nucleotide sequence). Insertions and deletions are not allowed in the calculation the percentage of identity of a contiguous nucleotide sequence. It will be understood that in determining identity, chemical modifications of the nucleobases are disregarded as long as the functional capacity of the nucleobase to form Watson Crick base pairing is retained (e.g. 5-methyl cytosine is considered identical to a cytosine for the purpose of calculating % identity).

As used herein, the term “hybridizing” or “hybridizes” refers to two nucleic acid strands (e.g. an oligonucleotide and a target nucleic acid) forming hydrogen bonds between base pairs on opposite strands thereby forming a duplex. The affinity of the binding between two nucleic acid strands is the strength of the hybridization. It is often described in terms of the melting temperature (T_(m)) defined as the temperature at which half of the oligonucleotides are duplexed with the target nucleic acid. At physiological conditions T_(m) is not strictly proportional to the affinity (Mergny and Lacroix, 2003, Oligonucleotides 13:515-537). The standard state Gibbs free energy ΔG° is a more accurate representation of binding affinity and is related to the dissociation constant (K_(d)) of the reaction by ΔG°=−RTln(K_(d)), where R is the gas constant and T is the absolute temperature. Therefore, a very low ΔG° of the reaction between an oligonucleotide and the target nucleic acid reflects a strong hybridization between the oligonucleotide and target nucleic acid. ΔG° is the energy associated with a reaction where aqueous concentrations are 1M, the pH is 7, and the temperature is 37° C. The hybridization of oligonucleotides to a target nucleic acid is a spontaneous reaction and for spontaneous reactions ΔG° is less than zero. ΔG° can be measured experimentally, for example, by use of the isothermal titration calorimetry (ITC) method as described in Hansen et al., 1965, Chem. Comm. 36-38 and Holdgate et al., 2005, Drug Discov Today. The skilled person will know that commercial equipment is available for ΔG° measurements. ΔG° can also be estimated numerically by using the nearest neighbor model as described by SantaLucia, 1998, Proc Natl Acad Sci USA. 95: 1460-1465 using appropriately derived thermodynamic parameters described by Sugimoto et al., 1995, Biochemistry 34:11211-11216 and McTigue et al., 2004, Biochemistry 43:5388-5405. In order to have the possibility of modulating its intended nucleic acid target by hybridization, oligonucleotides of the present invention hybridize to a target nucleic acid with estimated ΔG° values below −10 kcal for oligonucleotides that are 10-30 nucleotides in length. In some embodiments the degree or strength of hybridization is measured by the standard state Gibbs free energy ΔG°. The oligonucleotides may hybridize to a target nucleic acid with estimated ΔG° values below the range of −10 kcal, such as below −15 kcal, such as below −20 kcal and such as below −25 kcal for oligonucleotides that are 8-30 nucleotides in length. In some embodiments the oligonucleotides hybridize to a target nucleic acid with an estimated ΔG° value of −10 to −60 kcal, such as −12 to −40, such as from −15 to −30 kcal or −16 to −27 kcal such as −18 to −25 kcal.

As used herein, the term “target nucleic acid” refers to the nucleic acid which encodes a mammalian ATXN3 protein and may for example be a gene, a ATXN3 RNA, a mRNA, a pre-mRNA, a mature mRNA or a cDNA sequence. The target may therefore be referred to as an “ATXN3 target nucleic acid”.

In some embodiments, the target nucleic acid encodes a human ATXN3 protein, such as the human ATXN3 gene encoding the pre-mRNA sequence provided herein as SEQ ID NO:1. Thus, the target nucleic acid may be SEQ ID NO:1.

In some embodiments, the target nucleic acid encodes a mouse ATXN3 protein. Suitably, the target nucleic acid encoding a mouse ATXN3 protein comprises a sequence as shown in SEQ ID NO: 3.

In some embodiments, the target nucleic acid encodes a cynomolgus monkey ATXN3 protein. Suitably, the target nucleic acid encoding a cynomolgus monkey ATXN3 protein comprises a sequence as shown in SEQ ID NO: 2.

If employing the oligonucleotide of the invention in research or diagnostics the target nucleic acid may be a cDNA or a synthetic nucleic acid derived from DNA or RNA.

For in vivo or in vitro application, the oligonucleotide of the invention is typically capable of inhibiting the expression of the ATXN3 target nucleic acid in a cell which is expressing the ATXN3 target nucleic acid. The contiguous sequence of nucleobases of the oligonucleotide of the invention is typically complementary to the ATXN3 target nucleic acid, as measured across the length of the oligonucleotide, optionally with the exception of one or two mismatches, and optionally excluding nucleotide based linker regions which may link the oligonucleotide to an optional functional group such as a conjugate, or other non-complementary terminal nucleotides (e.g. region D′ or D″). The target nucleic acid is a messenger RNA, such as a mature mRNA or a pre-mRNA which encodes mammalian ATXN3 protein, such as human ATXN3, e.g. the human ATXN3 pre-mRNA sequence, such as that disclosed as SEQ ID NO:1, or ATXN3 mature mRNA. Further, the target nucleic acid may be a cynomolgus monkey ATXN3 pre-mRNA sequence, such as that disclosed as SEQ ID NO:1, or a cynomolgus monkey ATXN3 mature mRNA. Further, the target nucleic acid may be a mouse ATXN3 pre-mRNA sequence, such as that disclosed as SEQ ID NO:3, or mouse ATXN3 mature mRNA. SEQ ID NOS:1-3 are DNA sequences—it will be understood that target RNA sequences have uracil (U) bases in place of the thymidine bases (T).

TABLE 1 Target nucleic acids Target Nucleic Acid Sequence ID ATXN3 Homo sapiens pre-mRNA SEQ ID NO: 1 ATXN3 Macaca fascicularis pre-mRNA SEQ ID NO: 2 ATXN3 Mus musculus mRNA SEQ ID NO: 3

In some embodiments, the oligonucleotide of the invention targets SEQ ID NO: 1.

In some embodiments, the oligonucleotide of the invention targets SEQ ID NO:2.

In some embodiments, the oligonucleotide of the invention targets SEQ ID NO: 3.

In some embodiments, the oligonucleotide of the invention targets SEQ ID NO:1 and SEQ ID NO:2.

In some embodiments, the oligonucleotide of the invention targets SEQ ID NO:1 and SEQ ID NO:3.

In some embodiments, the oligonucleotide of the invention targets SEQ ID NO:1, SEQ ID NO:2 and SEQ ID NO:3.

As used herein, the term “target sequence” refers to a sequence of nucleotides present in the target nucleic acid which comprises the nucleobase sequence which is complementary to the oligonucleotide of the invention. In some embodiments, the target sequence consists of a region on the target nucleic acid which is complementary to the contiguous nucleotide sequence of the oligonucleotide of the invention.

Herein are provided numerous target sequence regions, as defined by regions of the human ATXN3 pre-mRNA (using SEQ ID NO:1 as a reference) which may be targeted by the oligonucleotides of the invention.

In some embodiments the target sequence is longer than the complementary sequence of a single oligonucleotide, and may, for example represent a preferred region of the target nucleic acid which may be targeted by several oligonucleotides of the invention.

The oligonucleotide of the invention comprises a contiguous nucleotide sequence which is complementary to or hybridizes to the target nucleic acid, such as a sub-sequence of the target nucleic acid, such as a target sequence described herein.

The oligonucleotide comprises a contiguous nucleotide sequence which are complementary to a target sequence present in the target nucleic acid molecule. The contiguous nucleotide sequence (and therefore the target sequence) comprises at least 10 contiguous nucleotides, such as 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 contiguous nucleotides, such as from 12-25, such as from 14-18 contiguous nucleotides.

As used herein, the term “target sequence region” refers to an antisense oligonucleotide, 10-30 nucleotides in length, wherein said antisense oligonucleotide comprises a contiguous nucleotide sequence 10-30 nucleotides in length, wherein the contiguous nucleotide sequence is at least 90% complementary to a region of SEQ ID NO:1. The region of SEQ ID NO:1 to which the antisense oligonucleotide of the invention is complementary to is referred to as the target sequence region.

In some embodiments the target sequence region is AAGAGTAAAATATGGGT (SEQ ID NO:1093).

In some embodiments the target sequence region is GAATGTAAAAGTGTACAG (SEQ ID NO:1094).

In some embodiments the target sequence region is GGAATGTAAAAGTGTACA (SEQ ID NO:1095).

In some embodiments the target sequence region is GGGAATGTAAAAGTGTAC (SEQ ID NO:1096).

In some embodiments the target sequence region is TTGATGGTATAATGAAGAA (SEQ ID NO:1097).

In some embodiments the target sequence region is GGAAGATGTAAATAAGATT (SEQ ID NO:1098).

In some embodiments, the target sequence region is AAGATGTAAATAAGATTC (SEQ ID NO:1992).

It is to be understood that target RNA sequences have uracil (U) bases in place of any thymidine (T) bases.

As used herein, the term “off-target sequence” refers to a sequence of nucleotides comprising a nucleobase sequence which may be partially complementary to an oligonucleotide of the invention but which is present in another nucleic acid than the target (ATXN3) nucleic acid.

As used herein, the term “target cell” refers to a cell which is expressing the target nucleic acid. In some embodiments the target cell may be in vivo or in vitro. In some embodiments the target cell is a mammalian cell such as a rodent cell, such as a mouse cell or a rat cell, or a primate cell such as a monkey cell (e.g. a cynomolgus monkey cell) or a human cell.

In preferred embodiments the target cell expresses human ATXN3 mRNA, such as the ATXN3 pre-mRNA, e.g. SEQ ID NO:1, or ATXN3 mature mRNA. In some embodiments the target cell expresses monkey ATXN3 mRNA, such as the ATXN3 pre-mRNA, e.g. SEQ ID NO:2, or ATXN3 mature mRNA. In some embodiments the target cell expresses mouse ATXN3 mRNA, such as the ATXN3 pre-mRNA, e.g. SEQ ID NO:3, or ATXN3 mature mRNA. The poly A tail of ATXN3 mRNA is typically disregarded for antisense oligonucleotide targeting.

As used herein, the term “naturally occurring variant” refers to variants of ATXN3 gene or transcripts which originate from the same genetic loci as the target nucleic acid, but may differ for example, by virtue of degeneracy of the genetic code causing a multiplicity of codons encoding the same amino acid, or due to alternative splicing of pre-mRNA, or the presence of polymorphisms, such as single nucleotide polymorphisms (SNPs), and allelic variants. Based on the presence of the sufficient complementary sequence to the oligonucleotide, the oligonucleotide of the invention may therefore target the target nucleic acid and naturally occurring variants thereof.

The Homo sapiens ATXN3 gene is located at chromosome 14, 92058552..92106621, complement (NC_000014.9, Gene ID 4287).

In some embodiments, the naturally occurring variants have at least 95% such as at least 98% or at least 99% homology to a mammalian ATXN3 target nucleic acid, such as a target nucleic acid selected form the group consisting of SEQ ID NOS: 1, 2 and 3. In some embodiments the naturally occurring variants have at least 99% homology to the human ATXN3 target nucleic acid of SEQ ID NO:1.

As used herein, the term “modulation of expression” refers to an overall term for an oligonucleotide's ability to alter the amount of ATXN3 protein or ATXN3 mRNA when compared to the amount of ATXN3 or ATXN3 mRNA prior to administration of the oligonucleotide. Alternatively modulation of expression may be determined by reference to a control experiment. It is generally understood that the control is an individual or target cell treated with a saline composition or an individual or target cell treated with a non-targeting oligonucleotide (mock).

One type of modulation is an oligonucleotide's ability to inhibit, down-regulate, reduce, suppress, remove, stop, block, prevent, lessen, lower, avoid or terminate expression of ATXN3, e.g. by degradation of ATXN3 mRNA.

As used herein, a “high affinity modified nucleoside” refers to a modified nucleoside which, when incorporated into the oligonucleotide enhances the affinity of the oligonucleotide for its complementary target, for example as measured by the melting temperature (T^(m)). A high affinity modified nucleoside of the present invention preferably result in an increase in melting temperature between +0.5 to +12° C., more preferably between +1.5 to +10° C. and most preferably between +3 to +8° C. per modified nucleoside. Numerous high affinity modified nucleosides are known in the art and include for example, many 2′ substituted nucleosides as well as locked nucleic acids (LNA) (see e.g. Freier & Altmann; Nucl. Acid Res., 1997, 25, 4429-4443 and Uhlmann; Curr. Opinion in Drug Development, 2000, 3(2), 293-213).

As used herein, the term “RNase H activity” refers to the ability of an antisense oligonucleotide to recruit RNase H when in a duplex with a complementary RNA molecule. WO 01/23613 provides in vitro methods for determining RNaseH activity, which may be used to determine the ability to recruit RNaseH. Typically an oligonucleotide is deemed capable of recruiting RNase H if it, when provided with a complementary target nucleic acid sequence, has an initial rate, as measured in pmol/l/min, of at least 5%, such as at least 10% or more than 20% of the of the initial rate determined when using a oligonucleotide having the same base sequence as the modified oligonucleotide being tested, but containing only DNA monomers with phosphorothioate linkages between all monomers in the oligonucleotide, and using the methodology provided by Example 91-95 of WO01/23613 (hereby incorporated by reference). For use in determining RHase H activity, recombinant human RNase H1 is available from Lubio Science GmbH, Lucerne, Switzerland.

The antisense oligonucleotide of the invention, or contiguous nucleotide sequence thereof may be a gapmer. The antisense gapmers are commonly used to inhibit a target nucleic acid via RNase H mediated degradation.

As used herein, the term “gapmer oligonucleotide” refers to an oligonucleotide that comprises at least three distinct structural regions—a 5′-flank, a gap and a 3′-flank (F-G-F′)—in the ′5→3′ orientation. The “gap” region (G) comprises a stretch of contiguous DNA nucleotides which enable the oligonucleotide to recruit RNase H. The gap region is flanked by a 5′ flanking region (F) comprising one or more sugar modified nucleosides, advantageously high affinity sugar modified nucleosides, and by a 3′ flanking region (F′) comprising one or more sugar modified nucleosides, advantageously high affinity sugar modified nucleosides. The one or more sugar modified nucleosides in region F and F′ enhance the affinity of the oligonucleotide for the target nucleic acid (i.e. are affinity enhancing sugar modified nucleosides). In some embodiments, the one or more sugar modified nucleosides in region F and F′ are 2′ sugar modified nucleosides, such as high affinity 2′ sugar modifications, such as independently selected from LNA and 2′-MOE.

In a gapmer design, the 5′ and 3′ most nucleosides of the gap region are DNA nucleosides, and are positioned adjacent to a sugar modified nucleoside of the 5′ (F) or 3′ (F′) region respectively. The flanks may further defined by having at least one sugar modified nucleoside at the end most distant from the gap region, i.e. at the 5′ end of the 5′ flank and at the 3′ end of the 3′ flank.

Regions F-G-F′ form a contiguous nucleotide sequence. Antisense oligonucleotides of the invention, or the contiguous nucleotide sequence thereof, may comprise a gapmer region of formula F-G-F′.

The overall length of the gapmer design F-G-F′ may be, for example 12 to 32 nucleosides, such as 13 to 24, such as 14 to 22 nucleosides, Such as from 14 to17, such as 16 to 18 nucleosides.

By way of example, the gapmer oligonucleotide of the present invention can be represented by the following formulae:

F₁₋₈-G₅₋₁₆-F′₁₋₈, such as

F₁₋₈-G₇₋₁₆-F′₂₋₈

with the proviso that the overall length of the gapmer regions F-G-F′ is at least 12, such as at least 14 nucleotides in length. Regions F, G and F′ are further defined below and can be incorporated into the F-G-F′ formula.

As used herein, “region G (gap region)” of the gapmer refers to a region of nucleosides which enables the oligonucleotide to recruit RNaseH, such as human RNase H1, typically DNA nucleosides. RNaseH is a cellular enzyme which recognizes the duplex between DNA and RNA, and enzymatically cleaves the RNA molecule. Suitably gapmers may have a gap region (G) of at least 5 or 6 contiguous DNA nucleosides, such as 5-16 contiguous DNA nucleosides, such as 6-15 contiguous DNA nucleosides, such as 7-14 contiguous DNA nucleosides, such as 8-12 contiguous DNA nucleotides, such as 8-12 contiguous DNA nucleotides in length. The gap region G may, in some embodiments consist of 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 or 16 contiguous DNA nucleosides. One or more cytosine (C) DNA in the gap region may in some instances be methylated (e.g. when a DNA c is followed by a DNA g) such residues are either annotated as 5-methyl-cytosine (^(me)C). In some embodiments the gap region G may consist of 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 or 16 contiguous phosphorothioate linked DNA nucleosides. In some embodiments, all internucleoside linkages in the gap are phosphorothioate linkages. Whilst traditional gapmers have a DNA gap region, there are numerous examples of modified nucleosides which allow for RNaseH recruitment when they are used within the gap region. Modified nucleosides which have been reported as being capable of recruiting RNaseH when included within a gap region include, for example, alpha-L-LNA, C4′ alkylated DNA (as described in PCT/EP2009/050349 and Vester et al., Bioorg. Med. Chem. Lett. 18 (2008) 2296-2300, both incorporated herein by reference), arabinose derived nucleosides like ANA and 2′F-ANA (Mangos et al. 2003 J. AM. CHEM. SOC. 125, 654-661), UNA (unlocked nucleic acid) (as described in Fluiter et al., Mol. Biosyst., 2009, 10, 1039 incorporated herein by reference). UNA is unlocked nucleic acid, typically where the bond between C2 and C3 of the ribose has been removed, forming an unlocked “sugar” residue. The modified nucleosides used in such gapmers may be nucleosides which adopt a 2′ endo (DNA like) structure when introduced into the gap region, i.e. modifications which allow for RNaseH recruitment). In some embodiments the DNA Gap region (G) described herein may optionally contain 1 to 3 sugar modified nucleosides which adopt a 2′ endo (DNA like) structure when introduced into the gap region.

Alternatively, there are numerous reports of the insertion of a modified nucleoside which confers a 3′ endo conformation into the gap region of gapmers, whilst retaining some RNaseH activity. Such gapmers with a gap region comprising one or more 3′endo modified nucleosides are referred to as “gap-breaker” or “gap-disrupted” gapmers, see for example WO2013/022984.

As used herein, the term “gap-breaker” or “gap-disrupted” refers to oligonucleotides that retain sufficient region of DNA nucleosides within the gap region to allow for RNaseH recruitment. The ability of “gap-breaker” oligonucleotide design to recruit RNaseH is typically sequence or even compound specific—see Rukov et al. 2015 Nucl. Acids Res. Vol. 43 pp. 8476-8487, which discloses “gap-breaker” oligonucleotides which recruit RNaseH which in some instances provide a more specific cleavage of the target RNA. Modified nucleosides used within the gap region of gap-breaker oligonucleotides may for example be modified nucleosides which confer a 3′endo confirmation, such 2′-O-methyl (OMe) or 2′-O-MOE (MOE) nucleosides, or beta-D LNA nucleosides (the bridge between C2′ and C4′ of the ribose sugar ring of a nucleoside is in the beta conformation), such as beta-D-oxy LNA or ScET nucleosides.

As with gapmers containing region G described above, the gap region of “gap-breaker” or “gap-disrupted” gapmers, have a DNA nucleosides at the 5′ end of the gap (adjacent to the 3′ nucleoside of region F), and a DNA nucleoside at the 3′ end of the gap (adjacent to the 5′ nucleoside of region F′). Gapmers which comprise a disrupted gap typically retain a region of at least 3 or 4 contiguous DNA nucleosides at either the 5′ end or 3′ end of the gap region.

Exemplary designs for gap-breaker oligonucleotides include:

F₁₋₈-[D₃₋₄-E₁-D₃₋₄]-F′₁₋₈

F₁₋₈-[D₁₋₄-E₁-D₃₋₄]-F′₁₋₈

F₁₋₈-[D₃₋₄-E₁-D₁₋₄]-F′₁₋₈

wherein region G is within the brackets [D_(n)-E_(r)-D_(m)], D is a contiguous sequence of DNA nucleosides, E is a modified nucleoside (the gap-breaker or gap-disrupting nucleoside), and F and F′ are the flanking regions as defined herein, and with the proviso that the overall length of the gapmer regions F-G-F′ is at least 12, such as at least 14 nucleotides in length.

In some embodiments, region G of a gap disrupted gapmer comprises at least 6 DNA nucleosides, such as 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 or 16 DNA nucleosides. As described above, the DNA nucleosides may be contiguous or may optionally be interspersed with one or more modified nucleosides, with the proviso that the gap region G is capable of mediating RNaseH recruitment.

As used herein, “region F (flanking region)” of the gapmer refers to a region of nucleosides that is positioned immediately adjacent to the 5′ DNA nucleoside of region G. The 3′ most nucleoside of region F is a sugar modified nucleoside, such as a high affinity sugar modified nucleoside, for example a 2′ substituted nucleoside, such as a MOE nucleoside, or an LNA nucleoside.

As used herein, “region F′ (flanking region)” of the gapmer refers to a region of nucleosides that is positioned immediately adjacent to the 3′ DNA nucleoside of region G. The 5′ most nucleoside of region F′ is a sugar modified nucleoside, such as a high affinity sugar modified nucleoside, for example a 2′ substituted nucleoside, such as a MOE nucleoside, or an LNA nucleoside.

Region F is 1-8 contiguous nucleotides in length, such as 2-6, such as 3-4 contiguous nucleotides in length. Advantageously the 5′ most nucleoside of region F is a sugar modified nucleoside. In some embodiments the two 5′ most nucleoside of region F are sugar modified nucleoside. In some embodiments the 5′ most nucleoside of region F is an LNA nucleoside. In some embodiments the two 5′ most nucleoside of region F are LNA nucleosides. In some embodiments the two 5′ most nucleoside of region F are 2′ substituted nucleoside nucleosides, such as two 3′ MOE nucleosides. In some embodiments the 5′ most nucleoside of region F is a 2′ substituted nucleoside, such as a MOE nucleoside.

Region F′ is 2-8 contiguous nucleotides in length, such as 3-6, such as 4-5 contiguous nucleotides in length. Advantageously, embodiments the 3′ most nucleoside of region F′ is a sugar modified nucleoside. In some embodiments the two 3′ most nucleoside of region F′ are sugar modified nucleoside. In some embodiments the two 3′ most nucleoside of region F′ are LNA nucleosides. In some embodiments the 3′ most nucleoside of region F′ is an LNA nucleoside. In some embodiments the two 3′ most nucleoside of region F′ are 2′ substituted nucleoside nucleosides, such as two 3′ MOE nucleosides. In some embodiments the 3′ most nucleoside of region F′ is a 2′ substituted nucleoside, such as a MOE nucleoside.

It should be noted that when the length of region F or F′ is one, it is advantageously an LNA nucleoside.

In some embodiments, region F and F′ independently consists of or comprises a contiguous sequence of sugar modified nucleosides. In some embodiments, the sugar modified nucleosides of region F may be independently selected from 2′-O-alkyl-RNA units, 2′-O-methyl-RNA, 2′-amino-DNA units, 2′-fluoro-DNA units, 2′-alkoxy-RNA, MOE units, LNA units, arabino nucleic acid (ANA) units and 2′-fluoro-ANA units.

In some embodiments, region F and F′ independently comprises both LNA and a 2′ substituted modified nucleosides (mixed wing design).

In some embodiments, region F and F′ consists of only one type of sugar modified nucleosides, such as only MOE or only beta-D-oxy LNA or only ScET. Such designs are also termed uniform flanks or uniform gapmer design.

In some embodiments, all the nucleosides of region F or F′, or F and F′ are LNA nucleosides, such as independently selected from beta-D-oxy LNA, ENA or ScET nucleosides. In some embodiments, all the nucleosides of region F or F′, or F and F′ are 2′ substituted nucleosides, such as OMe or MOE nucleosides. In some embodiments region F consists of 1, 2, 3, 4, 5, 6, 7, or 8 contiguous OMe or MOE nucleosides. In some embodiments only one of the flanking regions can consist of 2′ substituted nucleosides, such as OMe or MOE nucleosides. In some embodiments it is the 5′ (F) flanking region that consists 2′ substituted nucleosides, such as OMe or MOE nucleosides whereas the 3′ (F′) flanking region comprises at least one LNA nucleoside, such as beta-D-oxy LNA nucleosides or cET nucleosides. In some embodiments it is the 3′ (F′) flanking region that consists 2′ substituted nucleosides, such as OMe or MOE nucleosides whereas the 5′ (F) flanking region comprises at least one LNA nucleoside, such as beta-D-oxy LNA nucleosides or cET nucleosides.

In some embodiments, all the modified nucleosides of region F and F′ are LNA nucleosides, such as independently selected from beta-D-oxy LNA, ENA or ScET nucleosides, wherein region F or F′, or F and F′ may optionally comprise DNA nucleosides (an alternating flank, see definition of these for more details). In some embodiments, all the modified nucleosides of region F and F′ are beta-D-oxy LNA nucleosides, wherein region F or F′, or F and F′ may optionally comprise DNA nucleosides (an alternating flank, see definition of these for more details).

In some embodiments the 5′ most and the 3′ most nucleosides of region F and F′ are LNA nucleosides, such as beta-D-oxy LNA nucleosides or ScET nucleosides.

In some embodiments, the internucleoside linkage between region F and region G is a phosphorothioate internucleoside linkage. In some embodiments, the internucleoside linkage between region F′ and region G is a phosphorothioate internucleoside linkage. In some embodiments, the internucleoside linkages between the nucleosides of region F or F′, F and F′ are phosphorothioate internucleoside linkages.

As used herein, the term “LNA gapmer” refers to a gapmer wherein either one or both of region F and F′ comprises or consists of LNA nucleosides. A beta-D-oxy gapmer is a gapmer wherein either one or both of region F and F′ comprises or consists of beta-D-oxy LNA nucleosides.

In some embodiments the LNA gapmer is of formula: [LNA]₁₋₅-[region G]-[LNA]₁₋₅, wherein region G is as defined in the Gapmer region G definition.

As used herein, the term “MOE gapmer” refers to a gapmer wherein regions F and F′ consist of MOE nucleosides. In some embodiments the MOE gapmer is of design [MOE]₁₋₈-[Region G]-[MOE]₁₋₈, such as [MOE]₂₋₇-[Region G]₅₋₁₆-[MOE]₂₋₇, such as [MOE]₃₋₆-[Region G]-[MOE]₃₋₆, wherein region G is as defined in the Gapmer definition. MOE gapmers with a 5-10-5 design (MOE-DNA-MOE) have been widely used in the art.

As used herein, the term “mixed wing gapmer” refers to an LNA gapmer wherein one or both of region F and F′ comprise a 2′ substituted nucleoside, such as a 2′ substituted nucleoside independently selected from the group consisting of 2′-O-alkyl-RNA units, 2′-O-methyl-RNA, 2′-amino-DNA units, 2′-fluoro-DNA units, 2′-alkoxy-RNA, MOE units, arabino nucleic acid (ANA) units and 2′-fluoro-ANA units, such as a MOE nucleosides. In some embodiments wherein at least one of region F and F′, or both region F and F′ comprise at least one LNA nucleoside, the remaining nucleosides of region F and F′ are independently selected from the group consisting of MOE and LNA. In some embodiments wherein at least one of region F and F′, or both region F and F′ comprise at least two LNA nucleosides, the remaining nucleosides of region F and F′ are independently selected from the group consisting of MOE and LNA. In some mixed wing embodiments, one or both of region F and F′ may further comprise one or more DNA nucleosides.

Mixed wing gapmer designs are disclosed in WO2008/049085 and WO2012/109395, both of which are hereby incorporated by reference.

As used herein, the term “Alternating Flank Gapmer” refers to LNA gapmer oligonucleotides where at least one of the flanks (F or F′) comprises DNA in addition to the LNA nucleoside(s). In some embodiments at least one of region F or F′, or both region F and F′, comprise both LNA nucleosides and DNA nucleosides. In such embodiments, the flanking region F or F′, or both F and F′ comprise at least three nucleosides, wherein the 5′ and 3′ most nucleosides of the F and/or F′ region are LNA nucleosides.

In some embodiments at least one of region F or F′, or both region F and F′, comprise both LNA nucleosides and DNA nucleosides. In such embodiments, the flanking region F or F′, or both F and F′ comprise at least three nucleosides, wherein the 5′ and 3′ most nucleosides of the F or F′ region are LNA nucleosides, and there is at least one DNA nucleoside positioned between the 5′ and 3′ most LNA nucleosides of region F or F′ (or both region F and F′).

The oligonucleotide of the invention may in some embodiments comprise or consist of the contiguous nucleotide sequence of the oligonucleotide which is complementary to the target nucleic acid, such as the gapmer F-G-F′, and further 5′ and/or 3′ nucleosides. The further 5′ and/or 3′ nucleosides may or may not be fully complementary to the target nucleic acid. Such further 5′ and/or 3′ nucleosides may be referred to as “region D′” and “region D″” herein.

The addition of “region D′” or “region D″” may be used for the purpose of joining the contiguous nucleotide sequence, such as the gapmer, to a conjugate moiety or another functional group. When used for joining the contiguous nucleotide sequence with a conjugate moiety is can serve as a biocleavable linker. Alternatively it may be used to provide exonuclease protection or for ease of synthesis or manufacture.

“Region D′” and “Region D″” can be attached to the 5′ end of region F or the 3′ end of region F′, respectively to generate designs of the following formulas D′-F-G-F′, F-G-F′-D″ or D′-F-G-F′-D″. In this instance the F-G-F′ is the gapmer portion of the oligonucleotide and region D′ or D″ constitute a separate part of the oligonucleotide.

“Region D′” or “Region D″” may independently comprise or consist of 1, 2, 3, 4 or 5 additional nucleotides, which may be complementary or non-complementary to the target nucleic acid. The nucleotide adjacent to the F or F′ region is not a sugar-modified nucleotide, such as a DNA or RNA or base modified versions of these. The D′ or D′ region may serve as a nuclease susceptible biocleavable linker (see definition of linkers). In some embodiments the additional 5′ and/or 3′ end nucleotides are linked with phosphodiester linkages, and are DNA or RNA. Nucleotide based biocleavable linkers suitable for use as region D′ or D″ are disclosed in WO2014/076195, which include by way of example a phosphodiester linked DNA dinucleotide. The use of biocleavable linkers in poly-oligonucleotide constructs is disclosed in WO2015/113922, where they are used to link multiple antisense constructs (e.g. gapmer regions) within a single oligonucleotide.

In one embodiment the oligonucleotide of the invention comprises a region D′ and/or D″ in addition to the contiguous nucleotide sequence which constitutes the gapmer.

In some embodiments, the oligonucleotide of the present invention can be represented by the following formulae:

F-G-F′; in particular F₁₋₈-G₅₋₁₆-F′₂₋₈

D′-F-G-F′, in particular D′₁₋₃-F₁₋₈-G₅₋₁₆-F′₂₋₈

F-G-F′-D″, in particular F₁₋₈-G₅₋₁₆-F′₂₋₈-D″₁₋₃

D′-F-G-F′-D″, in particular D′₁₋₃-F₁₋₈-G₅₋₁₆-F′₂₋₈-D″₁₋₃

In some embodiments the internucleoside linkage positioned between region D′ and region F is a phosphodiester linkage. In some embodiments the internucleoside linkage positioned between region F′ and region D″ is a phosphodiester linkage.

As used herein, the term “conjugate” refers to an oligonucleotide which is covalently linked to a non-nucleotide moiety (conjugate moiety or region C or third region).

Conjugation of the oligonucleotide of the invention to one or more non-nucleotide moieties may improve the pharmacology of the oligonucleotide, e.g. by affecting the activity, cellular distribution, cellular uptake or stability of the oligonucleotide. In some embodiments the conjugate moiety modify or enhance the pharmacokinetic properties of the oligonucleotide by improving cellular distribution, bioavailability, metabolism, excretion, permeability, and/or cellular uptake of the oligonucleotide. In particular the conjugate may target the oligonucleotide to a specific organ, tissue or cell type and thereby enhance the effectiveness of the oligonucleotide in that organ, tissue or cell type. At the same time the conjugate may serve to reduce activity of the oligonucleotide in non-target cell types, tissues or organs, e.g. off target activity or activity in non-target cell types, tissues or organs.

In an embodiment, the non-nucleotide moiety (conjugate moiety) is selected from the group consisting of carbohydrates, cell surface receptor ligands, drug substances, hormones, lipophilic substances, polymers, proteins, peptides, toxins (e.g. bacterial toxins), vitamins, viral proteins (e.g. capsids) or combinations thereof.

As used herein, the term “linkage” or “linker” refers to a connection between two atoms that links one chemical group or segment of interest to another chemical group or segment of interest via one or more covalent bonds. Conjugate moieties can be attached to the oligonucleotide directly or through a linking moiety (e.g. linker or tether). Linkers serve to covalently connect a third region, e.g. a conjugate moiety (Region C), to a first region, e.g. an oligonucleotide or contiguous nucleotide sequence or gapmer region F-G-F′ (region A).

In some embodiments of the invention the conjugate or oligonucleotide conjugate of the invention may optionally, comprise a linker region (second region or region B and/or region Y) which is positioned between the oligonucleotide or contiguous nucleotide sequence complementary to the target nucleic acid (region A or first region) and the conjugate moiety (region C or third region).

As used herein, the term “Region B” refers to biocleavable linkers comprising or consisting of a physiologically labile bond that is cleavable under conditions normally encountered or analogous to those encountered within a mammalian body. Conditions under which physiologically labile linkers undergo chemical transformation (e.g., cleavage) include chemical conditions such as pH, temperature, oxidative or reductive conditions or agents, and salt concentration found in or analogous to those encountered in mammalian cells. Mammalian intracellular conditions also include the presence of enzymatic activity normally present in a mammalian cell such as from proteolytic enzymes or hydrolytic enzymes or nucleases. In one embodiment the biocleavable linker is susceptible to Si nuclease cleavage. DNA phosphodiester containing biocleavable linkers are described in more detail in WO 2014/076195 (hereby incorporated by reference)—see also region D′ or D″ herein.

As used herein, the term “Region Y” refers to linkers that are not necessarily biocleavable but primarily serve to covalently connect a conjugate moiety (region C or third region), to an oligonucleotide (region A or first region). The region Y linkers may comprise a chain structure or an oligomer of repeating units such as ethylene glycol, amino acid units or amino alkyl groups. The oligonucleotide conjugates of the present invention can be constructed of the following regional elements A-C, A-B-C, A-B-Y-C, A-Y-B-C or A-Y-C. In some embodiments the linker (region Y) is an amino alkyl, such as a C2 to C36 amino alkyl group, including, for example C6 to Cu amino alkyl groups. In a preferred embodiment the linker (region Y) is a C6 amino alkyl group.

II. Oligonucleotides for Inhibiting ATXN3

The invention relates to oligonucleotides, such as antisense oligonucleotides, targeting ATXN3 expression.

The oligonucleotides of the invention targeting ATXN3 are capable of hybridizing to and inhibiting the expression of a ATXN3 target nucleic acid in a cell which is expressing the ATXN3 target nucleic acid.

The ATXN3 target nucleic acid may be a mammalian ATXN3 mRNA or premRNA, such as a human, mouse or monkey ATXN3 mRNA or premRNA. In some embodiments, the ATXN3 target nucleic acid is ATXN3 mRNA or premRNA for example a premRNA or mRNA originating from the Homo sapiens Ataxin 3 (ATXN3), RefSeqGene on chromosome 14, exemplified by NCBI Reference Sequence NM_004993.5 (SEQ ID NO:1).

The human ATXN3 pre-mRNA is encoded on Homo sapiens Chromosome 14, NC_000014.9 (92058552..92106621, complement). GENE ID=4287 (ATX3).

The oligonucleotides of the invention are capable of inhibiting the expression of ATXN3 target nucleic acid, such as the ATXN3 mRNA, in a cell which is expressing the target nucleic acid, such as the ATXN3 mRNA (e.g. a human, monkey or mouse cell).

In some embodiments, the oligonucleotides of the invention are capable of inhibiting the expression of ATXN3 target nucleic acid in a cell which is expressing the target nucleic acid, so to reduce the level of ATXN3 target nucleic acid (e.g. the mRNA) by at least 50%, at least 60%, at least 70%, at least 80%, or at least 90% inhibition compared to the expression level of the ATXN3 target nucleic acid (e.g. the mRNA) in the cell. Suitably the cell is selected from the group consisting of a human cell, a monkey cell and a mouse cell. In some embodiments, the cell is a SK—N-AS, A431, NCI-H23 or ARPE19 cell (for more information on these cells, see Examples). Example 1 provides a suitable assay for evaluating the ability of the oligonucleotides of the invention to inhibit the expression of the target nucleic acid. Suitably the evaluation of a compounds ability to inhibit the expression of the target nucleic acid is performed in vitro, such a gymnotic in vitro assay, for example as according to Example 1.

In some embodiments, an oligonucleotide of the invention is more capable in inhibiting the expression of ATXN3 target nucleic acid in a cell which is expressing the target nucleic acid than in inhibiting the expression of KCNB2 nucleic acid in a cell which is expressing the KCNB2 nucleic acid, providing for a higher selectivity in targeting the ATXN3 target nucleic acid. KCNB2 (Potassium Voltage-Gated Channel Subfamily B Member 2) nucleic acid was identified as containing a potential off-target sequence which may be annealed to certain oligonucleotides targeting SEQ ID NO:1098 and/or SEQ ID NO:1992. Information, including sequence information, about the KCNB2 gene and transcripts can be found in the public database Ensembl (release 101) at gene id ENSG00000182674.

Suitably, the capability of an oligonucleotide to inhibit the expression of ATXN3 and KCNB2 nucleic acids is tested in a cell expressing both nucleic acids. In some embodiments, an oligonucleotide of the invention is capable of inhibiting the expression of ATXN3 target nucleic acid so as to reduce the level of ATXN3 target nucleic acid (e.g. the mRNA) by a fraction which is at least 50%, at least 60%, at least 70%, at least 80%, or at least 90% inhibition compared to the expression level of the ATXN3 target nucleic acid (e.g. the mRNA) in the cell, but reduces the level of KCNB2 off-target nucleic acid (e.g., the mRNA) as compared to the expression level of the KCNB2 target nucleic acid (e.g. the mRNA) in the cell by a smaller fraction. The cell, may, for example, be selected from the group consisting of a human cell, a monkey cell and a mouse cell. In some embodiments, the cell is a neuronal cell, such as an iCell® Glutaneuron cell (for more information on these cells, see Table 2). Examples 5 and 14 provides suitable assays for evaluating the ability of the oligonucleotides of the invention to inhibit the expression of the target nucleic acid as compared to the off-target nucleic acid. Suitably the evaluation of the ability of an oligonucleotide to inhibit the expression of the target nucleic acid and the off-target nucleic acid is performed in vitro, such a gymnotic in vitro assay, for example as according to Example 14.

Advantageously, an oligonucleotide according to the invention has a low EC50 in inhibiting the expression of ATXN3 target nucleic acid in a cell which is expressing the target nucleic acid, providing for a high efficacy and/or potency in targeting the ATXN3 target nucleic acid. In some embodiments, the EC50 for inhibiting the expression of ATXN3 target nucleic acid is no more than about 1 μM, such as no more than about 500 nM, such as no more than about 300 nM, such as no more than about 200 nM, such as no more than about 180 nM, such as no more than about 170 nM, such as no more than about 160 nM, such as no more than about 150 nM, such as no more than about 140 nM, such as no more than about 130 nM, such as no more than about 120 nM, such as no more than about 110 nM, such as no more than about 100 nM, such as no more than about 90 nM, such as no more than about 80 nM, such as no more than about 70 nM, such as no more than about 60 nM, such as no more than about 50 nM. The cell, may, for example, be selected from the group consisting of a human cell, a monkey cell and a mouse cell. In some embodiments, the cell is a neuronal cell, such as a human neuronal cell, such as an iCell® GlutaNeuron cell (for more information on these cells, see Table 2). A particularly suitable assay is described in Example 16.

Preferably, an oligonucleotide according to the invention also or alternatively has a lower EC50 for inhibiting the expression of ATXN3 target nucleic acid (e.g., mRNA) in a cell than for inhibiting the expression of KCNB2 off-target nucleic acid (e.g., mRNA) in the cell, indicating that 50% inhibition of the expression of the nucleic acid is, for ATXN3 target nucleic acid, achieved at a lower oligonucleotide concentration, thereby providing for a higher selectivity. In some embodiments, the ratio between the EC50 for inhibiting the expression of KCNB2 off-target nucleic acid (e.g., mRNA) and the EC50 for inhibiting the expression of ATXN3 target nucleic acid is at least about 2, such as at least about 2.1, such as at least about 2.2, such as at least about 2.5, such as at least about 3, such as at least about 4, such as at least about 5, such as at least about 6, such as at least about 7, such as at least about 8, such as at least about 9, such as at least about 10, such as at least about 12, such as at least about 15, such as at least about 20, such as at least about 50, such as at least about 100, such as at least about 200, such as at least about 400, such as at least about 600, such as at least about 1000. The cell, may, for example, be selected from the group consisting of a human cell, a monkey cell and a mouse cell. In some embodiments, the cell is a neuronal cell, such as a human neuronal cell, such as an iCell® GlutaNeuron cell (for more information on these cells, see Table 2). Particularly suitable assays are described in Examples 14 and 16.

Typically, an oligonucleotide according to the invention also or alternatively has a low toxicity. Suitably, this can be tested in an in vitro assay, such as, e.g., in any one or more of the assays described in Example 7.

An aspect of the present invention relates to an antisense oligonucleotide, such as an LNA antisense oligonucleotide gapmer which comprises a contiguous nucleotide sequence of 10 to 30 nucleotides in length with at least 90% complementarity, such as is fully complementary to SEQ ID NO:1, 2 or 3.

In some embodiments, the oligonucleotide comprises a contiguous sequence of 10-30 nucleotides, which is at least 90% complementary, such as at least 91%, such as at least 92%, such as at least 93%, such as at least 94%, such as at least 95%, such as at least 96%, such as at least 97%, such as at least 98%, or 100% complementary with a region of the target nucleic acid or a target sequence. The sequences of suitable target nucleic acids are described herein above.

In some embodiments, the oligonucleotide of the invention comprises a contiguous nucleotides sequence of 12-24, such as 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, or 23, contiguous nucleotides in length, wherein the contiguous nucleotide sequence is fully complementary to a target nucleic acid having a sequence as provided in the section “Taget sequence regions” above.

In some embodiments, the antisense oligonucleotide of the invention comprises a contiguous nucleotides sequence of 12-15, such as 13, or 14, 15 contiguous nucleotides in length, wherein the contiguous nucleotide sequence is fully complementary to a target nucleic acid having a sequence as provided in the section “Target sequence regions” above.

Typically, the antisense oligonucleotide of the invention or the contiguous nucleotide sequence thereof is a gapmer, such as an LNA gapmer, a mixed wing gapmer, or an alternating flank gapmer.

In some embodiments, the antisense oligonucleotide according to the invention, comprises a contiguous nucleotide sequence of at least 10 contiguous nucleotides, such as at least 12 contiguous nucleotides, such as at least 13 contiguous nucleotides, such as at least 14 contiguous nucleotides, such as at least 15 contiguous nucleotides, which is fully complementary to a target sequence comprised in a sequence selected from SEQ ID NO:1098, SEQ ID NO:1992, or both.

In some embodiments, the target sequence region of an antisense oligonucleotide according to the invention comprises or consists of SEQ ID NO:1098.

In some embodiments, the target sequence region of an antisense oligonucleotide according to the invention comprises or consists of SEQ ID NO:1992.

In some embodiments the contiguous nucleotide sequence of the antisense oligonucleotide according to the invention is less than 20 nucleotides in length. In some embodiments the contiguous nucleotide sequence of the antisense oligonucleotide according to the invention is 12-24 nucleotides in length. In some embodiments the contiguous nucleotide sequence of the antisense oligonucleotide according to the invention is 12-22 nucleotides in length. In some embodiments the contiguous nucleotide sequence of the antisense oligonucleotide according to the invention is 12-20 nucleotides in length. In some embodiments the contiguous nucleotide sequence of the antisense oligonucleotide according to the invention is 12-18 nucleotides in length. In some embodiments the contiguous nucleotide sequence of the antisense oligonucleotide according to the invention is 12-16 nucleotides in length.

Advantageously, in some embodiments all of the internucleoside linkages between the nucleosides of the contiguous nucleotide sequence are phosphorothioate internucleoside linkages.

In some embodiments, the contiguous nucleotide sequence is fully complementary to a target nucleic acid.

The oligonucleotide compounds represent specific designs of a motif sequence.

Typically, capital letters or the HELM-designation [LR] represent beta-D-oxy LNA nucleosides, lowercase letters or [dR] represent DNA nucleosides, all LNA C are 5-methyl cytosine, and 5-methyl DNA cytosines are presented by “e” or ^(m)c or [5meC], and all internucleoside linkages are, unless otherwise indicated, stereoundefined phosphorothioate internucleoside linkages [sP].

Design refers to the gapmer design, F-G-F′, where each number represents the number of consecutive modified nucleosides, e.g. 2′ modified nucleosides (first number=5′ flank), followed by the number of DNA nucleosides (second number=gap region), followed by the number of modified nucleosides, e.g. 2′ modified nucleosides (third number=3′ flank), optionally preceded by or followed by further repeated regions of DNA and LNA, which are not necessarily part of the contiguous nucleotide sequence that is complementary to the target nucleic acid.

Motif sequences represent the contiguous sequence of nucleobases present in the oligonucleotide, also referred to as the Oligonucleotide Base Sequence.

Typically, the antisense oligonucleotides is 12-24, such as 12-18, nucleosides in length wherein the antisense oligonucleotide comprises a contiguous nucleotide sequence comprising at least 12, such as at least 14, such as at least 15 contiguous nucleotides present in a sequence selected from SEQ ID NO:1122 and SEQ ID NO:1816, with one or more of the further modifications described herein.

In some embodiments, the antisense oligonucleotide is a gapmer oligonucleotide comprising a contiguous nucleotide sequence of formula 5′-F-G-F′-3′, where region F and F′ independently comprise 1-8 sugar modified nucleosides, and G is a region between 5 and 16 nucleosides which are capable of recruiting RNaseH.

In some embodiments, the sugar-modified nucleosides of region F and F′ are independently selected from the group consisting of 2′-O-alkyl-RNA, 2′-O-methyl-RNA, 2′-O-alkoxy-RNA, 2′-O-methoxyethyl-RNA, 2′-amino-DNA, 2′-fluoro-DNA, arabino nucleic acid (ANA), 2′-fluoro-ANA and LNA nucleosides.

In some embodiments, region G comprises 5-16 contiguous DNA nucleosides.

In some embodiments, the antisense oligonucleotide is an LNA gapmer oligonucleotide comprising LNA nucleosides.

In some embodiments, the LNA nucleosides are beta-D-oxy LNA nucleosides.

In some embodiments, substantially all, or all of the internucleoside linkages between the contiguous nucleosides are phosphorothioate internucleoside linkages.

In some embodiments, substantially all, or all phosphorothioate internucleoside linkages between the contiguous nucleosides are stereo-undefined phosphorothioate internucleoside linkages.

In some embodiments, one or more internucleoside linkages between the contiguous nucleosides are stereodefined phosphorothioate internucleoside linkages.

In some embodiments, one or more internucleoside linkages between the contiguous nucleosides are MOPS linkages.

In some embodiments, one or more internucleoside linkages between the contiguous nucleosides are MOPO linkages.

Particular sequence motifs and antisense oligonucleotides of the present invention are shown in Table 11 of Example 13, wherein each compound represents a separate specific embodiment according to the invention.

In some embodiments, the antisense oligonucleotide comprises a contiguous nucleotide sequence comprising the base sequence of an antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1122_82 to 1122_406, shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of an antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1122_82 to 1122_406, shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises a contiguous nucleotide sequence comprising the nucleoside base sequence and, optionally, the sugar moiety modifications, of an antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1122_91, 1122_107, 1122_54, 1122_155, 1122_156, 1122_157, 1122_158, 1122_167, 1122_172, 1122_175, 1122_294, 1122_296, 1122_359, 1122_384 and 1122_385, shown in Table 14.

In one aspect, the antisense oligonucleotide is an LNA gapmer antisense oligonucleotide comprising a contiguous nucleotide sequence comprising the contiguous nucleotides present in SEQ ID NO:1122 except for the modified nucleosides and modified internucleoside linkages indicated in Table 15 for each residue in SEQ ID NO: 1122. In a specific embodiment, the antisense oligonucleotide is more capable of inhibiting the expression of human ATXN3 than human KCNB2 in a cell which is expressing human ATXN3 and human KCNB2.

In one embodiment, the LNA gapmer antisense oligonucleotide comprises the contiguous nucleotides present in SEQ ID NO:1122, wherein all internucleoside linkages are stereo-undefined phosphorothioate internucleoside linkages, wherein 2, 3 or 4 of the nucleosides in each of region F and region F′ are beta-D-oxy LNA nucleosides [LR], typically wherein each beta-D-oxy LNA cytosine is 5-methyl cytosine [LR](5meC), except for:

-   -   (a) residue 10 being a 2′-O-methyl uracil nucleoside [mR](U)         (e.g., Compound ID No. 1122_91);     -   (b) residue 3 being a 2′-O-methyl uracil nucleoside [mR](U)         (e.g., Compound ID No. 1122_107);     -   (c) the internucleoside linkage between residues 11 and 12 being         a stereodefined phosphorothioate internucleoside linkage [ssP]         (e.g., Compound ID No. 1122_154);     -   (d) the internucleoside linkage between residues 12 and 13 being         a stereodefined phosphorothioate internucleoside linkage [ssP]         (e.g., Compound ID No. 1122_155);     -   (e) the internucleoside linkage between residues 13 and 14 being         a stereodefined phosphorothioate internucleoside linkage [ssP]         (e.g., Compound ID No. 1122_156);     -   (f) the internucleoside linkage between residues 14 and 15 being         a stereodefined phosphorothioate internucleoside linkage [ssP]         (e.g., Compound ID No. 1122_157);     -   (g) the internucleoside linkage between residues 15 and 16 being         a stereodefined phosphorothioate internucleoside linkage [ssP]         (e.g., Compound ID No. 1122_158);     -   (h) residue 7 being a 2′-O-methoxyethyl adenine nucleoside         [MOE](A) (e.g., Compound ID No. 1122_167);     -   (i) residue 15 being a 2′-O-methyl cytosine nucleoside [mR](C)         (e.g., Compound ID NO. 1122_172);     -   (j) residue 11 being a 2′-O-methyl adenine nucleoside [mR](A)         (e.g., Compound ID No. 1122_175);     -   (k) residue 18 being a 2′-fluoro cytosine nucleoside [fR](C)         (e.g., Compound ID No. 1122_294);     -   (l) residue 4 being a 2′-O-methyl cytosine nucleoside [mR](C)         (e.g., Compound ID No. 1122_296);     -   (m) the internucleoside linkage between residues 15 and 16 being         a 3-methoxypropyiphosphonothioate internucleoside linkage [MOPS]         (e.g., Compound ID No. 1122_359);     -   (n) the internucleoside linkage between residues 16 and 17 being         a 3-methoxypropylphosphoriothioate internucleoside linkage         [MOPS] (e.g., Compound ID No. 1122_384);     -   (o) the internucleoside linkage between residues 6 and 7 being a         3-methoxypropylphosphonothioate internucleoside linkage [MOPS]         (e.g., Compound ID No. 1122_385); or     -   (p) a combination of any two or more of (a) to (o).

In some embodiments, the one or more modified nucleosides and/or one or more modified internucleoside linkages are, for each residue in SEQ ID NO:1122, independently selected from the options for that residue as shown in Table 15.

In one aspect, the antisense oligonucleotide is an LNA gapmer antisense oligonucleotide comprising a contiguous nucleotide sequence comprising the contiguous nucleotides present in SEQ ID NO:1816 except for the modified nucleosides and modified internucleoside linkages indicated in Table 16 for each residue in SEQ ID NO:1816. In a specific embodiment, the antisense oligonucleotide is more capable of inhibiting the expression of human ATXN3 than human KCNB2 in a cell which is expressing human ATXN3 and human KCNB2.

In one embodiment, the LNA gapmer antisense oligonucleotide comprises the contiguous nucleotides present in SEQ ID NO:1816, wherein all internucleoside linkages are stereo-undefined phosphorothioate internucleoside linkages, wherein 4, 5 or 6 of the nucleosides in the F-region and 2 or 3 of the nucleosides in the F′-region are beta-D-oxy LNA nucleosides [LR], typically wherein each beta-D-oxy LNA cytosine is 5-methyl cytosine [LR](5meC), except for:

-   -   (a) the internucleoside linkage between residues 12 and 13 being         a stereodefined phosphorothioate internucleoside linkage [ssP]         (e.g., Compound ID No. 1816_13);     -   (b) the internucleoside linkage between residues 14 and 15 being         a stereodefined phosphorothioate internucleoside linkage [ssP]         (e.g., Compound ID No. 1816_15);     -   (c) residue 8 being a 2′-fluoro adenine nucleoside [fR](A)         (e.g., Compound ID No. 1816_28);     -   (d) residues 1, 2, 3, 5, 7, 8, 16, 17 and 18 being LNA         beta-D-oxy LNA nucleosides [LR], wherein each beta-D-oxy LNA         cytosine is 5-methyl cytosine [LR](5meC) (e.g, Compound ID No.         181641);     -   (e) residue 17 being a 2′-O-methoxyethyl thymine nucleoside         [MOE](T) (e.g., Compound ID No. 1816_42);     -   (f) residue 16 being a 2′-O-methoxyethyl cytosine nucleoside         [MOE](5meC) (e.g., Compound ID No. 1816_43);     -   (g) residue 8 being a 2′-O-methyl adenine nucleoside [mR](A)         (e.g., Compound ID No. 1816_60);     -   (h) residue 3 being a 2′-O-methyl adenine nucleoside [mR](A)         (e.g., Compound ID No. 1816_61);     -   (i) residue 16 being a 2′-O-fluoro cytosine nucleoside [fR](C)         (e.g., Compound ID No. 1816_64);     -   (j) residue 16 being a 2′-O-methyl cytosine nucleoside [mR](C)         (e.g., Compound ID No. 1816_65);     -   (k) residue 17 being a 2′-fluoro uracil nucleoside [fR](U)         (e.g., Compound ID No. 1816_68);     -   (l) the internucleoside linkage between residues 16 and 17 being         a 3-methoxypropylphosphonothioate internucleoside linkage [MOPS]         (e.g., Compound ID No. 1816_92); or     -   (m) a combination of any two or more of (a) to (1).

In some embodiments, the one or more modified nucleosides and/or one or more modified internucleoside linkages are, for each residue in SEQ ID NO:1816, independently selected from the options for that residue as shown in Table 16.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_91, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_107, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_154, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_155, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_156, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_157, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_158, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_167, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_172, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_175, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_294, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_296, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_359, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_384, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1122_385, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_13, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_15, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_28, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_41, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_42, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_43, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_60, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_61, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_64, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_65, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_68, as shown in Table 11.

In some embodiments, the antisense oligonucleotide comprises or consists of Compound ID No. 1816_92, as shown in Table 11.

In some embodiments, the antisense oligonucleotide is an antisense oligonucleotide according to the following chemical annotation:

-   -   (a)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([m R])U_([sP]).^([dR])(A)_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C)_([sP]).^([LR][5me])C         (SEQ ID NO:1122, wherein residue 10 is U) (Compound ID No.         1122_91);     -   (b)         ^([LR])A_([sP]).^([LR])A_([sP]).^([mR])U_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([LR])T_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122, wherein residue 3 is U) (Compound ID No.         1122_107);     -   (c)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_154);     -   (d)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dr])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_155);     -   (e)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR])[5meC]_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([L R][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_156);     -   (f)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR])[5meC]_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([L R][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_157);     -   (g)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_158);     -   (h)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([MOE])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_167);     -   (i)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR])[5meC]_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([L R][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_172);     -   (j)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([mR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_175);     -   (k)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([fR])C_([sP]).^([LR][5me])C         (SEQ ID NO: 1122) (Compound ID No. 1122_294);     -   (l)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([mR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([s P]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122_296);     -   (m)         ^([LR])A_([sP]).^([LR])A_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([MOPS]).^([LR])T_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122359);     -   (n)         ^([LR])A_([sP]).^([LR])A_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([LR])T_([MOPS]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122384);     -   (o)         ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([MOPS]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([L R][5me])C         (SEQ ID NO:1122) (Compound ID No. 1122385);     -   (p)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T         (SEQ ID NO:1816) (Compound ID No. 1816_13);     -   (q)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T         (SEQ ID NO:1816) (Compound ID No. 1816_15);     -   (r)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([fR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T         (SEQ ID NO:1816) (Compound ID No. 1816_28);     -   (s)         ^([LR])G_([sP]).^([LR])A_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T         (SEQ ID NO:1816) (Compound ID No. 1816_41);     -   (t)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([MOE])T_([sP]).^([LR])T         (SEQ ID NO: 1816) (Compound ID No. 1816_42);     -   (u)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).         [MOE][5me]C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO: 1816)         (Compound ID No. 1816_43);     -   (v)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([mR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T         (SEQ ID NO:1816) (Compound ID No. 1816_60);     -   (w)         ^([LR])G_([sP]).^([LR])A_([sP]).^([mR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T         (SEQ ID NO:1816) (Compound ID No. 1816_61);     -   (x)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([fR])C_([sP]).^([LR])T_([sP]).^([LR])T         (SEQ ID NO:1816) (Compound ID No. 1816_64);     -   (y)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([LR])T_([sP]).^([LR])T         (SEQ ID NO:1816) (Compound ID No. 1816_65);     -   (z)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([fR])U_([sP]).^([LR])T         (SEQ ID NO:1816, wherein residue 17 is U) (Compound ID No.         1816_68); or     -   (aa)         ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([d R])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR)C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([MOPS]).^([LR])T_([sP]).^(LR)]T         (SEQ ID NO:1816) (Compound ID No. 1816_92);

or is a pharmaceutically acceptable salt thereof, wherein

[LR] is a beta-D-oxy-LNA nucleoside,

[LR][5me]C is a beta-D-oxy-LNA 5-methyl cytosine nucleoside,

[dR] is a DNA nucleoside,

[sP] is a phosphorothioate internucleoside linkage (stereo undefined)

[ssP] is a stereodefined Sp phosphorothioate internucleoside linkage

[MOPS] is a 3-methoxypropylphosphonothioate internucleoside linkage

[MOPO] is a 3-methoxypropylphosphonate internucleoside linkage

[mR] is a 2′-O-methyl nucleoside,

[MOE] is a 2′-O-methoxyethyl nucleoside, and

[fR] is a 2′-fluoro nucleoside.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12A (Compound ID No. 1122_91); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12B (Compound ID No. 1122_107); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12C (Compound ID No. 1122_154); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12D (Compound ID No. 1122_155); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12E (Compound ID No. 1122_156); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12F (Compound ID No. 1122_157); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12G (Compound ID No. 1122_158); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12H (Compound ID No. 1122_167); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12I (Compound ID No. 1122_172); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12J (Compound ID No. 1122_175); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12K (Compound ID No. 1122_294); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12L (Compound ID No. 1122_296); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12M (Compound ID No. 1122_359); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12N (Compound ID No. 1122_384); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12O (Compound ID No. 1122_385); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12P (Compound ID No. 1816_13); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12Q (Compound ID No. 1816_15); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12R (Compound ID No. 1816_28); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12S (Compound ID No. 1816_41); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12T (Compound ID No. 1816_42); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12U (Compound ID No. 1816_43); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12V (Compound ID No. 1816_60); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12W (Compound ID No. 1816_61); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12X (Compound ID No. 1816_64); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12Y (Compound ID No. 1816_65); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12Z (Compound ID No. 1816_68); or a pharmaceutically acceptable salt thereof.

In one embodiment, the antisense oligonucleotide is the antisense oligonucleotide shown in FIG. 12AA (Compound ID No. 1816_92); or a pharmaceutically acceptable salt thereof.

III. Compositions, Methods, and Applications for Inhibition of ATXN3 Expression

A. Method of Manufacture

In a further aspect, the invention provides methods for manufacturing the oligonucleotides of the invention comprising reacting nucleotide units and thereby forming covalently linked contiguous nucleotide units comprised in the oligonucleotide. Preferably, the method uses phophoramidite chemistry (see for example Caruthers et al, 1987, Methods in Enzymology vol. 154, pages 287-313). In a further embodiment the method further comprises reacting the contiguous nucleotide sequence with a conjugating moiety (ligand) to covalently attach the conjugate moiety to the oligonucleotide. In a further aspect a method is provided for manufacturing the composition of the invention, comprising mixing the oligonucleotide or conjugated oligonucleotide of the invention with a pharmaceutically acceptable diluent, solvent, carrier, salt and/or adjuvant.

B. Pharmaceutical Composition

In a further aspect, the invention provides pharmaceutical compositions comprising any of the aforementioned oligonucleotides and/or oligonucleotide conjugates or salts thereof and a pharmaceutically acceptable diluent, carrier, salt and/or adjuvant.

In a further aspect, the invention provides pharmaceutical compositions comprising any of the aforementioned oligonucleotides and/or oligonucleotide conjugates or salts thereof and a pharmaceutically acceptable diluent, carrier, salt or adjuvant.

A pharmaceutically acceptable diluent includes phosphate-buffered saline (PBS) and pharmaceutically acceptable salts include, but are not limited to, sodium and potassium salts. In some embodiments the pharmaceutically acceptable diluent is sterile phosphate buffered saline. In some embodiments the oligonucleotide is used in the pharmaceutically acceptable diluent at a concentration of 50-300 μM solution.

The compounds according to the present invention may exist in the form of their pharmaceutically acceptable salts. The term “pharmaceutically acceptable salt” refers to conventional acid-addition salts or base-addition salts that retain the biological effectiveness and properties of the compounds of the present invention and are formed from suitable non-toxic organic or inorganic acids or organic or inorganic bases. Acid-addition salts include for example those derived from inorganic acids such as hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric acid, sulfamic acid, phosphoric acid and nitric acid, and those derived from organic acids such as p-toluenesulfonic acid, salicylic acid, methanesulfonic acid, oxalic acid, succinic acid, citric acid, malic acid, lactic acid, fumaric acid, and the like. Base-addition salts include those derived from ammonium, potassium, sodium and, quaternary ammonium hydroxides, such as for example, tetramethyl ammonium hydroxide. The chemical modification of a pharmaceutical compound into a salt is a technique well known to pharmaceutical chemists in order to obtain improved physical and chemical stability, hygroscopicity, flowability and solubility of compounds. It is for example described in Bastin, Organic Process Research & Development 2000, 4, 427-435 or in Ansel, In: Pharmaceutical Dosage Forms and Drug Delivery Systems, 6th ed. (1995), pp. 196 and 1456-1457. For example, the pharmaceutically acceptable salt of the compounds provided herein may be a sodium salt.

Suitable formulations for use in the present invention are found in Remington's Pharmaceutical Sciences, Mack Publishing Company, Philadelphia, Pa., 17th ed., 1985. For a brief review of methods for drug delivery, see, e.g., Langer (Science 249:1527-1533, 1990). WO 2007/031091 provides further suitable and preferred examples of pharmaceutically acceptable diluents, carriers and adjuvants (hereby incorporated by reference). Suitable dosages, formulations, administration routes, compositions, dosage forms, combinations with other therapeutic agents, pro-drug formulations are also provided in WO2007/031091.

Oligonucleotides or oligonucleotide conjugates of the invention may be mixed with pharmaceutically acceptable active or inert substances for the preparation of pharmaceutical compositions or formulations. Compositions and methods for the formulation of pharmaceutical compositions are dependent upon a number of criteria, including, but not limited to, route of administration, extent of disease, or dose to be administered.

These compositions may be sterilized by conventional sterilization techniques, or may be sterile filtered. The resulting aqueous solutions may be packaged for use as is, or lyophilized, the lyophilized preparation being combined with a sterile aqueous carrier prior to administration. The pH of the preparations typically will be between 3 and 11, more preferably between 5 and 9 or between 6 and 8, and most preferably between 7 and 8, such as 7 to 7.5. The resulting compositions in solid form may be packaged in multiple single dose units, each containing a fixed amount of the above-mentioned agent or agents, such as in a sealed package of tablets or capsules. The composition in solid form can also be packaged in a container for a flexible quantity, such as in a squeezable tube designed for a topically applicable cream or ointment.

In some embodiments, the oligonucleotide or oligonucleotide conjugate of the invention is a prodrug. In particular with respect to oligonucleotide conjugates the conjugate moiety is cleaved of the oligonucleotide once the prodrug is delivered to the site of action, e.g. the target cell.

C. Applications

The oligonucleotides of the invention may be utilized as research reagents for, for example, diagnostics, therapeutics and prophylaxis.

In research, such oligonucleotides may be used to specifically modulate the synthesis of ATXN3 protein in cells (e.g. in vitro cell cultures) and experimental animals thereby facilitating functional analysis of the target or an appraisal of its usefulness as a target for therapeutic intervention. Typically the target modulation is achieved by degrading or inhibiting the mRNA producing the protein, thereby prevent protein formation or by degrading or inhibiting a modulator of the gene or mRNA producing the protein.

If employing the oligonucleotide of the invention in research or diagnostics the target nucleic acid may be a cDNA or a synthetic nucleic acid derived from DNA or RNA.

The present invention provides an in vivo or in vitro method for modulating ATXN3 expression in a target cell which is expressing ATXN3, said method comprising administering an oligonucleotide of the invention in an effective amount to said cell.

In some embodiments, the target cell, is a mammalian cell in particular a human cell. The target cell may be an in vitro cell culture or an in vivo cell forming part of a tissue in a mammal.

In diagnostics the oligonucleotides may be used to detect and quantitate ATXN3 expression in cell and tissues by northern blotting, in-situ hybridisation or similar techniques.

For therapeutics, an animal or a human, suspected of having a disease or disorder, which can be treated by modulating the expression of ATXN3

The invention provides methods for treating or preventing a disease, comprising administering a therapeutically or prophylactically effective amount of an oligonucleotide, an oligonucleotide conjugate or a pharmaceutical composition of the invention to a subject suffering from or susceptible to the disease.

The invention also relates to an oligonucleotide, a composition or a conjugate as defined herein for use as a medicament.

The oligonucleotide, oligonucleotide conjugate or a pharmaceutical composition according to the invention is typically administered in an effective amount.

The invention also provides for the use of the oligonucleotide or oligonucleotide conjugate of the invention as described for the manufacture of a medicament for the treatment of a disorder as referred to herein, or for a method of the treatment of as a disorder as referred to herein.

The disease or disorder, as referred to herein, is associated with expression of ATXN3. In some embodiments disease or disorder may be associated with a mutation in the ATXN3 gene. Therefore, in some embodiments, the target nucleic acid is a mutated form of the ATXN3 sequence.

The methods of the invention are preferably employed for treatment or prophylaxis against diseases caused by abnormal levels and/or activity of ATXN3.

The invention further relates to use of an oligonucleotide, oligonucleotide conjugate or a pharmaceutical composition as defined herein for the manufacture of a medicament for the treatment of abnormal levels and/or activity of ATXN3.

In one embodiment, the invention relates to oligonucleotides, oligonucleotide conjugates or pharmaceutical compositions for use in the treatment of spinocerebellar ataxia.

D. Administration

In some embodiments, the oligonucleotides or pharmaceutical compositions of the present invention may be administered oral. In further embodiments, the oligonucleotides or pharmaceutical compositions of the present invention may be administered topical or enteral or parenteral (such as, intravenous, subcutaneous, intra-muscular, intracerebral, intracerebroventricular or intrathecal).

In a preferred embodiment the oligonucleotide or pharmaceutical compositions of the present invention are administered by a parenteral route including intravenous, intraarterial, subcutaneous, intraperitoneal or intramuscular injection or infusion, intrathecal or intracranial, e.g. intracerebral or intraventricular, intravitreal administration. In one embodiment the active oligonucleotide or oligonucleotide conjugate is administered intravenously. In another embodiment the active oligonucleotide or oligonucleotide conjugate is administered subcutaneously.

In some embodiments, the oligonucleotide, oligonucleotide conjugate or pharmaceutical composition of the invention is administered at a dose of 0.1-15 mg/kg, such as from 0.2-10 mg/kg, such as from 0.25-5 mg/kg. The administration can be once a week, every 2^(nd) week, every third week or even once a month.

E. Combination therapies

In some embodiments the oligonucleotide, oligonucleotide conjugate or pharmaceutical composition of the invention is for use in a combination treatment with another therapeutic agent. The therapeutic agent can for example be the standard of care for the diseases or disorders described above.

EXAMPLES

Materials and Methods:

Oligonucleotide Synthesis:

Oligonucleotide synthesis is generally known in the art. Below is a protocol which may be applied. The oligonucleotides of the present invention may have been produced by slightly varying methods in terms of apparatus, support and concentrations used.

Oligonucleotides are synthesized on uridine universal supports using the phosphoramidite approach on an MermMade 192 oligonucleotide synthesizer at 1 μmol scale. At the end of the synthesis, the oligonucleotides are cleaved from the solid support using aqueous ammonia for 5-16 hours at 60° C. For any MOPS and MOPO modifications, the oligonucleotides are deprotected at room temperature for −16 hours. The oligonucleotides are purified by reverse phase HPLC (RP-HPLC) or by solid phase extractions and characterized by UPLC, and the molecular mass is further confirmed by ESI-MS.

Elongation of The Oligonucleotide:

The coupling of 5′DMTr protected nucleoside O-cyanoethyl-phosphoramidites, including DNA-A(Bz), DNA-G(iBu), DNA-C(Bz), DNA-T, LNA-5-methyl-C(Bz), LNA-A(Bz), LNA-G(dmf), LNA-T, MOE-A(Bz), MOE-G(iBu), MOE-(T), MOE-(U), MOE-5-methyl-C(Bz), 2′F-A(Bz), 2′F(T), 2′F(U), 2′F—C(Ac), 2′F-G(iBu), 2′OMe-A(Bz), 2′OMe(U), 2′OMe(T), 2′OMe-C(Ac), 2′OMe-G(iBu), 2′OMe-G(dmf), MOP-dA(Bz), MOP-dT, MOP-dC(Ac), MOP-dG(iBu), MOP-LNA-A(Bz), MOP-LNA-T, MOP-LNA-C(Bz), MOP-LNA-G(iBu), MOP-LNA-G(dmf) is performed by using a solution of 0.1 M of the 5′-O-DMT-protected amidite in acetonitrile and DCI (4,5-dicyanoimidazole) in acetonitrile (0.25 M) as activator.

Purification by RP-HPLC:

The crude compounds are purified by preparative RP-HPLC on a Phenomenex Jupiter C18 10μ150×10 mm column. 0.1 M ammonium acetate pH 8 and acetonitrile is used as buffers at a flow rate of 5 mL/min. The collected fractions are lyophilized to give the purified compound typically as a white solid.

Abbreviations

DCI 4,5-Dicyanoimidazole

DCM: Dichloromethane

DMF: Dimethylformamidine

DMT: 4,4′-Dimethoxytrityl

THF: Tetrahydrofurane

Bz: Benzoyl

Ibu: Isobutyryl

RP-HPLC: Reverse phase high performance liquid chromatography

T_(m) Assay:

Oligonucleotide and RNA target (phosphate linked, PO) duplexes are diluted to 3 mM in 500 ml RNase-free water and mixed with 500 ml 2×T_(m)-buffer (200 mM NaCl, 0.2 mM EDTA, 20 mM Naphosphate, pH 7.0). The solution is heated to 95° C. for 3 min and then allowed to anneal in room temperature for 30 min. The duplex melting temperatures (T_(m)) is measured on a Lambda 40 UV/VIS Spectrophotometer equipped with a Peltier temperature programmer PTP6 using PE Templab software (Perkin Elmer). The temperature is ramped up from 20° C. to 95° C. and then down to 25° C., recording absorption at 260 nm. First derivative and the local maximums of both the melting and annealing are used to assess the duplex T_(m).

Cell Lines:

TABLE 2 Details in relation to the cell lines for assaying the compounds: Hours of Cells/well cell incubation Cell lines (96 well prior to Days of Name Vendor Cat. no. Cell medium plate) treatment treatment A431 ECACC 85090402 EMEM (Cat. no. 8000 24 3 M2279), 10% FBS (Cat. no. F7524), 2 mM Glutamine (Cat. no. G8541), 0.1 mM NEAA (Cat. no. M7145), 25 μg/ml Gentamicin (Cat. no. G1397) NCI-H23 ATCC CRL-5800 RPMI 1640 10000 24 3 (Cat. no. R2405), 10% FBS (Cat. no. F7524), 10 mM Hepes (Cat. no. H0887), 1 mM Sodium Pyruvate (Cat. no. S8636), 25 μg/ml Gentamicin (Cat. no. G1397) ARPE19 ATCC CRL-2302 DMEM/F-12 HAM 2000 0 4 (Cat. no. D8437), 10% FBS (Cat. no. F7524), 25 μg/ml Gentamicin (Cat. no. G1397) U251 ECACC 9063001 EMEM (Cat. no. 2000 0 4 M2279), 10% FBS (Cat. no. F7524), 2 mM Glutamine (Cat. no. G8541), 0.1 mM NEAA (Cat. no. M7145), 1 mM Sodium Pyruvate (Cat. no. S8636), 25 μg/ml Gentamicin (Cat. no. G1397) U2-OS ATCC HTB-96 MCCoy 5A medium 7000 24 3 (Cat. no. M8403), 10% FBS (Cat. no. F7524), 1.5 mM Glutamine (Cat. no. G8541), 25 μg/ml Gentamicin (Cat. no. G1397) SK-N-AS ATCC CRL-2137 Dulbecco's Modified 9300 24 4 Eagle's Medium, supplemented with 0.1 mM Non-Essential Amino Acids (NEAA) and fetal bovine serum to a final concentration of 10% iCell ® Stemcell R1034 BrainPhys Neuronal 50.000-80.000 168 4 GlutaNeurons Technologies Medium (Cat. no. 5790) supplemented with iCell ® GlutaNeurons Kit (Stemcell Technologies. no. R1034) according to vendor), N-2 (Thermo Fisher), 1 μg/ml Laminin 512 (BioLamina, no. LN521) * All medium and additives are purchased from Sigma Aldrich unless otherweise stated.

Example 1: Testing In Vitro Efficacy of LNA Oligonucleotides in SK—N-AS, A431, NCI-H23 and ARPE19 Cell Lines at 25 and 5 μM

Materials and Methods:

An oligonucleotide screen is performed in human cell lines using the LNA oligonucleotides in Table 3 (CMP ID NO: 4_1-1089_1, see column “oligonucleotide compounds”) targeting SEQ ID NO: 1. The human cell lines SK-N-AS, A341, NCI-H23 and ARPE19 are purchased from the vendors listed in Table 2, and are maintained as recommended by the supplier in a humidified incubator at 37° C. with 5% CO₂. For the screening assays, cells are seeded in 96 multi well plates in media recommended by the supplier (see Table 2 in the Materials and Methods section). The number of cells/well is optimized for each cell line (see Table 2 in the Materials and Methods section).

Cells are incubated between 0 and 24 hours before addition of the oligonucleotide in a concentration of 5 or 25 μM (dissolved in PBS). 3-4 days after addition of the oligonucleotide, the cells are harvested (The incubation times for each cell line are indicated in Table 2 in the Materials and Methods section).

RNA is extracted using the Qiagen RNeasy 96 kit (74182), according to the manufacturer's instructions). cDNA synthesis and qPCR is performed using qScript XLT one-step RT-qPCR ToughMix Low ROX, 95134-100 (Quanta Biosciences). Target transcript levels are quantified using FAM labeled TaqMan assays from Thermo Fisher Scientific in a multiplex reaction with a VIC labelled GUSB control. TaqMan primer assays for the target transcript of interest ATXN3 (see below) and a house keeping gene GUSB (4326320E VIC-MGB probe).

ATXN3 primer assay (Assay ID: N/A Item Name Hs.PT.58.39355049):

Forward primer: (SEQ ID NO: 1128) GTTTCTAAAGACATGGTCACAGC Reverse: (SEQ ID NO: 1129) CTATCAGGACAGAGTTCACATCC Probe: (SEQ ID NO: 1130) 56-FAM/AAAGGCCAG/ZEN/CCACCAGTTCAGG/3IABkFQ/

Results:

The relative ATXN3 mRNA expression levels are determined as % of control (PBS-treated cells) i.e. the lower the value the larger the inhibition.

TABLE 3 Sequence Motifs and Compounds of Exemplary Compounds of the Invention SEQ CMP ID Oligonucteotide ID NO motif sequence start end design NO compound 4 aagaaaccaaaccc 743 756 2-10-2 4_1 AAgaaaccaaacCC 5 aaagaaaccaaacc 744 757 2-10-2 5_1 AAagaaaccaaaCC 6 aaaagaaaccaaac 745 758 2-10-2 6_1 AAaagaaaccaaA C 7 caaaagaaaccaaa 746 759 2-10-2 7_1 CAaaagaaaccaA A 8 ccaaaagaaaccaa 747 760 2-10-2 8_1 CCaaaagaaaccAA 9 tccactcctaatac 803 816 2-10-2 9_1 TCcactcctaatAC 10 gtccactcctaata 804 817 2-10-2 10_1 GTccactcctaaTA 11 agtccactcctaat 805 818 2-10-2 11_1 AGtccactcctaAT 12 cagtccactcctaa 806 819 2-10-2 12_1 CAgtccactcctAA 13 ccagtccactccta 807 820 2-10-2 13_1 CCagtccactccTA 14 actctttccaaaca 1012 1025 2-10-2 14_1 ACtctttccaaaCA 15 aactctttccaaac 1013 1026 2-10-2 15_1 AActctttccaaAC 16 caactctttccaaa 1014 1027 2-10-2 16_1 CAactctttccaAA 17 gcaactctttccaa 1015 1028 2-10-2 17_1 GCaactctttccAA 18 agcaactctttcca 1016 1029 2-10-2 18_1 AGcaactctttcCA 19 cagcaactctttcc 1017 1030 2-10-2 19_1 CAgcaactctttCC 20 ccagcaactctttc 1018 1031 2-10-2 20_1 CCagcaactcttTC 21 accagcaactcttt 1019 1032 2-10-2 21_1 ACcagcaactctTT 22 ctcctattaaataa 1040 1053 2-10-2 22_1 CTcctattaaatAA 23 cctcctattaaata 1041 1054 2-10-2 23_1 CCtcctattaaaTA 24 tcctcctattaaat 1042 1055 2-10-2 24_1 TCctcctattaaAT 25 ctcctcctattaaa 1043 1056 2-10-2 25_1 CTcctcctattaAA 26 gctcctcctattaa 1044 1057 2-10-2 26_1 GCtcctcctattAA 27 tgctcctcctatta 1045 1058 2-10-2 27_1 TGctcctcctatTA 28 ttgctcctcctatt 1046 1059 2-10-2 28_1 TTgctcctcctaTT 29 tttgctcctcctat 1047 1060 2-10-2 29_1 TTtgctcctcctAT 30 ctttgctcctccta 1048 1061 2-10-2 30_1 CTttgctcctccTA 31 cctttgctcctcct 1049 1062 2-10-2 31_1 CetttgctcctcCT 32 ccctttgctcctcc 1050 1063 2-10-2 32_1 CCctttgctcctCC 33 accctttgctcctc 1051 1064 2-10-2 33_1 ACcctttgctccTC 34 aaccctttgctcct 1052 1065 2-10-2 34_1 AAccctttgctcCT 35 aaaccctttgctcc 1053 1066 2-10-2 35_1 AAaccctttgctCC 36 aaaaccctttgctc 1054 1067 2-10-2 36_1 AAaaccctttgcTC 37 aaaaaccctttgct 1055 1068 2-10-2 37_1 AAaaaccctttgCT 38 caaaaaccctttgc 1056 1069 2-10-2 38_1 CAaaaaccctttGC 39 acaaaaaccctttg 1057 1070 2-10-2 39_1 ACaaaaacccttTG 40 aacaaaaacccttt 1058 1071 2-10-2 40_1 AAcaaaaaccctTT 41 aaacaaaaaccctt 1059 1072 2-10-2 41_1 AAacaaaaacccTT 42 aaaacaaaaaccct 1060 1073 2-10-2 42_1 AAaacaaaaaccCT 43 taaaacaaaaaccc 1061 1074 2-10-2 43_1 TAaaacaaaaacCC 44 ataaaacaaaaacc 1062 1075 2-10-2 44_1 ATaaaacaaaaaCC 45 aataaaacaaaaac 1063 1076 2-10-2 45_1 AAtaaaacaaaaAC 46 taataaaacaaaaa 1064 1077 2-10-2 46_1 TAataaaacaaaAA 47 ttaataaaacaaaa 1065 1078 2-10-2 47_1 TTaataaaacaaAA 48 tttaataaaacaaa 1066 1079 2-10-2 48_1 TTtaataaaacaAA 49 atttaataaaacaa 1067 1080 2-10-2 49_1 ATttaataaaacAA 50 ttaaaataaaaatt 1194 1207 2-10-2 50_1 TTaaaataaaaaTT 51 tttaaaataaaaat 1195 1208 2-10-2 51_1 TTtaaaataaaaAT 52 ctttaaaataaaaa 1196 1209 2-10-2 52_1 CTttaaaataaaAA 53 tctttaaaataaaa 1197 1210 2-10-2 53_1 TCtttaaaataaAA 54 atctttaaaataaa 1198 1211 2-10-2 54_1 ATctttaaaataAA 55 catctttaaaataa 1199 1212 2-10-2 55_1 CAtctttaaaatAA 56 ccatctttaaaata 1200 1213 2-10-2 56_1 CCatctttaaaaTA 57 tctaacttaataaa 2886 2899 2-10-2 57_1 TCtaacttaataAA 58 ttctaacttaataa 2887 2900 2-10-2 58_1 TTctaacttaatAA 59 attctaacttaata 2888 2901 2-10-2 59_1 ATtctaacttaaTA 60 cattctaacttaat 2889 2902 2-10-2 60_1 CAttctaacttaAT 61 acattctaacttaa 2890 2903 2-10-2 61_1 ACattctaacttAA 62 tacattctaactta 2891 2904 2-10-2 62_1 TAcattctaactTA 63 ttacattctaactt 2892 2905 2-10-2 63_1 TTacattctaacTT 64 tttacattctaact 2893 2906 2-10-2 64_1 TTtacattctaaCT 65 ttttacattctaac 2894 2907 2-10-2 65_1 TTttacattctaAC 66 tttttacattctaa 2895 2908 2-10-2 66_1 TTtttacattctAA 67 gtttttacattcta 2896 2909 2-10-2 67_1 GTttttacattcTA 68 tgtttttacattct 2897 2910 2-10-2 68_1 TGtttttacattCT 69 ctgtttttacattc 2898 2911 2-10-2 69_1 CTgtttttacatTC 70 ttcaaatatttatt 2969 2982 2-10-2 70_1 TTcaaatatttaTT 71 attcaaatatttat 2970 2983 2-10-2 71_1 ATtcaaatatttAT 72 cattcaaatattta 2971 2984 2-10-2 72_1 CAttcaaatattTA 73 ccattcaaatattt 2972 2985 2-10-2 73_1 CCattcaaatatTT 74 cccattcaaatatt 2973 2986 2-10-2 74_1 CCcattcaaataTT 75 ccccattcaaatat 2974 2987 2-10-2 75_1 CCccattcaaatAT 76 gccccattcaaata 2975 2988 2-10-2 76_1 GCcccattcaaaTA 77 tatacatttttttc 3173 3186 2-10-2 77_1 TAtacattttttTC 78 atatacattttttt 3174 3187 2-10-2 78_1 ATatacatttttTT 79 tatatacatttttt 3175 3188 2-10-2 79_1 TAtatacattttTT 80 atatatacattttt 3176 3189 2-10-2 80_1 ATatatacatttTT 81 aatatatacatttt 3177 3190 2-10-2 81_1 AAtatatacattTT 82 aaatatatacattt 3178 3191 2-10-2 82_1 AAatatatacatTT 83 caaatatatacatt 3179 3192 2-10-2 83_1 CAaatatatacaTT 84 tcaaatatatacat 3180 3193 2-10-2 84_1 TCaaatatatacAT 85 ttcaaatatataca 3181 3194 2-10-2 85_1 TTcaaatatataCA 86 attcaaatatatac 3182 3195 2-10-2 86_1 ATtcaaatatatAC 87 cattcaaatatata 3183 3196 2-10-2 87_1 CAttcaaatataTA 88 ccattcaaatatat 3184 3197 2-10-2 88_1 CCattcaaatatAT 89 tccattcaaatata 3185 3198 2-10-2 89_1 TCcattcaaataTA 90 atccattcaaatat 3186 3199 2-10-2 90_1 ATccattcaaatAT 91 tatccattcaaata 3187 3200 2-10-2 91_1 TAtccattcaaaTA 92 ttatccattcaaat 3188 3201 2-10-2 92_1 TTatccattcaaAT 93 tttatccattcaaa 3189 3202 2-10-2 931 TTtatccattcaAA 94 ctttatccattcaa 3190 3203 2-10-2 941 CTttatccattcAA 95 tctttatccattca 3191 3204 2-10-2 951 TCtttatccattCA 96 ctctttatccattc 3192 3205 2-10-2 96_1 CTctttatccatTC 97 tctctttatccatt 3193 3206 2-10-2 971 TCtctttatccaTT 98 ccatatatatctca 3221 3234 2-10-2 98_1 CCatatatatctCA 99 accatatatatctc 3222 3235 2-10-2 991 ACcatatatatcTC 100 caccatatatatct 3223 3236 2-10-2 100_1 CAccatatatatCT 101 gcaccatatatatc 3224 3237 2-10-2 101_1 GCaccatatataTC 102 agcaccatatatat 3225 3238 2-10-2 102_1 AGcaccatatatAT 103 cagcaccatatata 3226 3239 2-10-2 103_1 CAgcaccatataTA 104 acagcaccatatat 3227 3240 2-10-2 104_1 ACagcaccatatAT 105 aacagcaccatata 3228 3241 2-10-2 105_1 AAcagcaccataTA 106 aaaacaaacaacaa 3462 3475 2-10-2 106_1 AAaacaaacaacA A 107 taaaacaaacaaca 3463 3476 2-10-2 107_1 TAaaacaaacaaCA 108 ctaaaacaaacaac 3464 3477 2-10-2 108_1 CTaaaacaaacaAC 109 actaaaacaaacaa 3465 3478 2-10-2 109_1 ACtaaaacaaacAA 110 aactaaaacaaaca 3466 3479 2-10-2 110_1 AActaaaacaaaCA 111 gaactaaaacaaac 3467 3480 2-10-2 111_1 GAactaaaacaaAC 112 agaactaaaacaaa 3468 3481 2-10-2 112_1 AGaactaaaacaAA 113 cagaactaaaacaa 3469 3482 2-10-2 113_1 CAgaactaaaacAA 114 ccagaactaaaaca 3470 3483 2-10-2 114_1 CCagaactaaaaCA 115 accagaactaaaac 3471 3484 2-10-2 115_1 ACcagaactaaaAC 116 atgttattatcccc 3882 3895 2-10-2 116_1 ATgttattatccCC 117 tatgttattatccc 3883 3896 2-10-2 117_1 TAtgttattatcCC 118 ctatgttattatcc 3884 3897 2-10-2 118_1 CTatgttattatCC 119 tctatgttattatc 3885 3898 2-10-2 119_1 TCtatgttattaTC 120 tacactctaactct 3908 3921 2-10-2 120_1 TAcactctaactCT 121 ctacactctaactc 3909 3922 2-10-2 121_1 CTacactctaacTC 122 tctacactctaact 3910 3923 2-10-2 122_1 TCtacactctaaCT 123 ctctacactctaac 3911 3924 2-10-2 123_1 CTctacactctaAC 124 tctctacactctaa 3912 3925 2-10-2 124_1 TCtctacactctAA 125 ttctctacactcta 3913 3926 2-10-2 125_1 TTctctacactcTA 126 cttctctacactct 3914 3927 2-10-2 126_1 CTtctctacactCT 127 ccttctctacactc 3915 3928 2-10-2 127_1 CCttctctacacTC 128 tacaacacaaatca 4102 4115 2-10-2 128_1 TAcaacacaaatCA 129 ctacaacacaaatc 4103 4116 2-10-2 129_1 CTacaacacaaaTC 130 actacaacacaaat 4104 4117 2-10-2 130_1 ACtacaacacaaAT 131 aactacaacacaaa 4105 4118 2-10-2 131_1 AActacaacacaAA 132 taactacaacacaa 4106 4119 2-10-2 132_1 TAactacaacacAA 133 ctaactacaacaca 4107 4120 2-10-2 133_1 CTaactacaacaCA 134 actaactacaacac 4108 4121 2-10-2 134_1 ACtaactacaacAC 135 tactaactacaaca 4109 4122 2-10-2 135_1 TActaactacaaCA 136 ctactaactacaac 4110 4123 2-10-2 136_1 CTactaactacaAC 137 actactaactacaa 4111 4124 2-10-2 137_1 ACtactaactacAA 138 cactactaactaca 4112 4125 2-10-2 138_1 CActactaactaCA 139 acactactaactac 4113 4126 2-10-2 139_1 ACactactaactAC 140 gacactactaacta 4114 4127 2-10-2 140_1 GAcactactaacTA 141 agacactactaact 4115 4128 2-10-2 141_1 AGacactactaaCT 142 tttacccccaacct 4173 4186 2-10-2 142_1 TTtacccccaacCT 143 atttacccccaacc 4174 4187 2-10-2 143_1 ATttacccccaaCC 144 catttacccccaac 4175 4188 2-10-2 144_1 CAtttacccccaAC 145 tcatttacccccaa 4176 4189 2-10-2 145_1 TCatttacccccAA 146 atcatttaccccca 4177 4190 2-10-2 146_1 ATcatttaccccCA 147 aatcatttaccccc 4178 4191 2-10-2 147_1 AAtcatttacccCC 148 aaatcatttacccc 4179 4192 2-10-2 148_1 AAatcatttaccCC 149 caaatcatttaccc 4180 4193 2-10-2 149_1 CAaatcatttacCC 150 ccaaatcatttacc 4181 4194 2-10-2 150_1 CCaaatcatttaCC 151 accaaatcatttac 4182 4195 2-10-2 151_1 ACcaaatcatttAC 152 taccaaatcattta 4183 4196 2-10-2 152_1 TAccaaatcattTA 153 ctaccaaatcattt 4184 4197 2-10-2 153_1 CTaccaaatcatTT 154 gctaccaaatcatt 4185 4198 2-10-2 154_1 GCtaccaaatcaTT 155 tgctaccaaatcat 4186 4199 2-10-2 155_1 TGctaccaaatcAT 156 ctgctaccaaatca 4187 4200 2-10-2 156_1 CTgctaccaaatCA 157 actgctaccaaatc 4188 4201 2-10-2 157_1 ACtgctaccaaaTC 158 aactgctaccaaat 4189 4202 2-10-2 158_1 AActgctaccaaAT 159 aagctttaatcaaa 5102 5115 2-10-2 159_1 AAgctttaatcaAA 160 caagctttaatcaa 5103 5116 2-10-2 160_1 CAagctttaatcAA 161 tcaagctttaatca 5104 5117 2-10-2 161_1 TCaagctttaatCA 162 atcaagctttaatc 5105 5118 2-10-2 162_1 ATcaagctttaaTC 163 catcaagctttaat 5106 5119 2-10-2 163_1 CAtcaagctttaAT 164 tcaaactatcccca 5131 5144 2-10-2 164_1 TCaaactatcccCA 165 ctcaaactatcccc 5132 5145 2-10-2 165_1 CTcaaactatccCC 166 tctcaaactatccc 5133 5146 2-10-2 166_1 TCtcaaactatcCC 167 atctcaaactatcc 5134 5147 2-10-2 167_1 ATctcaaactatCC 168 tatctcaaactatc 5135 5148 2-10-2 168_1 TAtctcaaactaTC 169 ttatctcaaactat 5136 5149 2-10-2 169_1 TTatctcaaactAT 170 cttatctcaaacta 5137 5150 2-10-2 170_1 CTtatctcaaacTA 171 ccttatctcaaact 5138 5151 2-10-2 171_1 CCttatctcaaaCT 172 cccttatctcaaac 5139 5152 2-10-2 172_1 CCcttatctcaaAC 173 gcccttatctcaaa 5140 5153 2-10-2 173_1 GCccttatctcaAA 174 tgcccttatctcaa 5141 5154 2-10-2 174_1 TGcccttatctcAA 175 caaacttcatcaaa 5540 5553 2-10-2 175_1 CAaacttcatcaAA 176 tcaaacttcatcaa 5541 5554 2-10-2 176_1 TCaaacttcatcAA 177 atcaaacttcatca 5542 5555 2-10-2 177_1 ATcaaacttcatCA 178 aatcaaacttcatc 5543 5556 2-10-2 178_1 AAtcaaacttcaTC 179 aaatcaaacttcat 5544 5557 2-10-2 179_1 AAatcaaacttcAT 180 gaaatcaaacttca 5545 5558 2-10-2 180_1 GAaatcaaacttCA 181 tgaaatcaaacttc 5546 5559 2-10-2 181_1 TGaaatcaaactTC 182 ttgaaatcaaactt 5547 5560 2-10-2 182_1 TTgaaatcaaacTT 183 aacacaaatttcct 5693 5706 2-10-2 183_1 AAcacaaatttcCT 184 taacacaaatttcc 5694 5707 2-10-2 184_1 TAacacaaatttCC 185 ctaacacaaatttc 5695 5708 2-10-2 185_1 CTaacacaaattTC 186 gctaacacaaattt 5696 5709 2-10-2 186_1 GCtaacacaaatTT 187 tgctaacacaaatt 5697 5710 2-10-2 187_1 TGctaacacaaaTT 188 ttgctaacacaaat 5698 5711 2-10-2 188_1 TTgctaacacaaAT 189 tttgctaacacaaa 5699 5712 2-10-2 189_1 TTtgctaacacaAA 190 ctttgctaacacaa 5700 5713 2-10-2 190_1 CTttgctaacacAA 191 cctttgctaacaca 5701 5714 2-10-2 191_1 CetttgctaacaCA 192 taactaataattat 6417 6430 2-10-2 192_1 TAactaataattAT 193 ataactaataatta 6418 6431 2-10-2 193_1 ATaactaataatTA 194 aataactaataatt 6419 6432 2-10-2 194_1 AAtaactaataaTT 195 taataactaataat 6420 6433 2-10-2 195_1 TAataactaataAT 196 ataataactaataa 6421 6434 2-10-2 196_1 ATaataactaatAA 197 aataataactaata 6422 6435 2-10-2 197_1 AAtaataactaaTA 198 caataataactaat 6423 6436 2-10-2 198_1 CAataataactaAT 199 ccaataataactaa 6424 6437 2-10-2 199_1 CCaataataactAA 200 accaataataacta 6425 6438 2-10-2 200_1 ACcaataataacTA 201 aaccaataataact 6426 6439 2-10-2 201_1 AAccaataataaCT 202 taaccaataataac 6427 6440 2-10-2 202_1 TAaccaataataAC 203 ataaccaataataa 6428 6441 2-10-2 203_1 ATaaccaataatAA 204 tataaccaataata 6429 6442 2-10-2 204_1 TAtaaccaataaTA 205 gtataaccaataat 6430 6443 2-10-2 205_1 GTataaccaataAT 206 acatcacacaattt 7415 7428 2-10-2 206_1 ACatcacacaatTT 207 gacatcacacaatt 7416 7429 2-10-2 207_1 GAcatcacacaaTT 208 tgacatcacacaat 7417 7430 2-10-2 208_1 TGacatcacacaAT 209 ctgacatcacacaa 7418 7431 2-10-2 209_1 CTgacatcacacAA 210 tctgacatcacaca 7419 7432 2-10-2 210_1 TCtgacatcacaCA 211 atctgacatcacac 7420 7433 2-10-2 211_1 ATctgacatcacAC 212 ttccttaacccaac 7436 7449 2-10-2 212_1 TTccttaacccaAC 213 attccttaacccaa 7437 7450 2-10-2 213_1 ATtccttaacccAA 214 tattccttaaccca 7438 7451 2-10-2 214_1 TAttccttaaccCA 215 ctattccttaaccc 7439 7452 2-10-2 215_1 CTattccttaacCC 216 tctattccttaacc 7440 7453 2-10-2 216_1 TCtattccttaaCC 217 gtctattccttaac 7441 7454 2-10-2 217_1 GTctattccttaAC 218 catcaaatctcata 8609 8622 2-10-2 218_1 CAtcaaatctcaTA 219 gcatcaaatctcat 8610 8623 2-10-2 219_1 GCatcaaatctcAT 220 tgcatcaaatctca 8611 8624 2-10-2 220_1 TGcatcaaatctCA 221 atgcatcaaatctc 8612 8625 2-10-2 221_1 ATgcatcaaatcTC 222 aatgcatcaaatct 8613 8626 2-10-2 222_1 AAtgcatcaaatCT 223 attttaaacaaaca 8637 8650 2-10-2 223_1 ATtttaaacaaaCA 224 tattttaaacaaac 8638 8651 2-10-2 224_1 TAttttaaacaaAC 225 ttattttaaacaaa 8639 8652 2-10-2 225_1 TTattttaaacaAA 226 attattttaaacaa 8640 8653 2-10-2 226_1 ATtattttaaacAA 227 aattattttaaaca 8641 8654 2-10-2 227_1 AAttattttaaaCA 228 gaattattttaaac 8642 8655 2-10-2 228_1 GAattattttaaAC 229 ttttacaaatctac 8693 8706 2-10-2 229_1 TTttacaaatctAC 230 attttacaaatcta 8694 8707 2-10-2 230_1 ATtttacaaatcTA 231 tattttacaaatct 8695 8708 2-10-2 231_1 TAttttacaaatCT 232 ttattttacaaatc 8696 8709 2-10-2 232_1 TTattttacaaaTC 233 tttattttacaaat 8697 8710 2-10-2 233_1 TTtattttacaaAT 234 atttattttacaaa 8698 8711 2-10-2 234_1 ATttattttacaAA 235 catttattttacaa 8699 8712 2-10-2 235_1 CAtttattttacAA 236 acatttattttaca 8700 8713 2-10-2 236_1 ACatttattttaCA 237 aacatttattttac 8701 8714 2-10-2 237_1 AAcatttattttAC 238 taacatttatttta 8702 8715 2-10-2 238_1 TAacatttatttTA 239 aatttaatcattaa 9391 9404 2-10-2 239_1 AAtttaatcattAA 240 taatttaatcatta 9392 9405 2-10-2 240_1 TAatttaatcatTA 241 ataatttaatcatt 9393 9406 2-10-2 241_1 ATaatttaatcaTT 242 aataatttaatcat 9394 9407 2-10-2 242_1 AAtaatttaatcAT 243 aaataatttaatca 9395 9408 2-10-2 243_1 AAataatttaatCA 244 taaataatttaatc 9396 9409 2-10-2 244_1 TAaataatttaaTC 245 ctaaataatttaat 9397 9410 2-10-2 245_1 CTaaataatttaAT 246 cctaaataatttaa 9398 9411 2-10-2 246_1 CCtaaataatttAA 247 ccctaaataattta 9399 9412 2-10-2 247_1 CCctaaataattTA 248 cccctaaataattt 9400 9413 2-10-2 248_1 CCcctaaataatTT 249 tcccctaaataatt 9401 9414 2-10-2 249_1 TCccctaaataaTT 250 tatataaaaatcta 10958 10971 2-10-2 250_1 TAtataaaaatcTA 251 ctatataaaaatct 10959 10972 2-10-2 251_1 CTatataaaaatCT 252 tctatataaaaatc 10960 10973 2-10-2 252_1 TCtatataaaaaTC 253 atctatataaaaat 10961 10974 2-10-2 253_1 ATctatataaaaAT 254 tatctatataaaaa 10962 10975 2-10-2 254_1 TAtctatataaaAA 255 ttatctatataaaa 10963 10976 2-10-2 255_1 TTatctatataaAA 256 tttatctatataaa 10964 10977 2-10-2 256_1 TTtatctatataAA 257 ccccactctaatat 11001 11014 2-10-2 257_1 CCccactctaatAT 258 gccccactctaata 11002 11015 2-10-2 258_1 GCcccactctaaTA 259 tgccccactctaat 11003 11016 2-10-2 259_1 TGccccactctaAT 260 atgccccactctaa 11004 11017 2-10-2 260_1 ATgccccactctAA 261 aatgccccactcta 11005 11018 2-10-2 261_1 AAtgccccactcTA 262 aaatgccccactct 11006 11019 2-10-2 262_1 AAatgccccactCT 263 taaatgccccactc 11007 11020 2-10-2 263_1 TAaatgccccacTC 264 ttaaatgccccact 11008 11021 2-10-2 264_1 TTaaatgccccaCT 265 atataaccaccaaa 11546 11559 2-10-2 265_1 ATataaccaccaAA 266 tatataaccaccaa 11547 11560 2-10-2 266_1 TAtataaccaccAA 267 atatataaccacca 11548 11561 2-10-2 267_1 ATatataaccacCA 268 tatatataaccacc 11549 11562 2-10-2 268_1 TAtatataaccaCC 269 atatatataaccac 11550 11563 2-10-2 269_1 ATatatataaccAC 270 aaaattcactatct 11942 11955 2-10-2 270_1 AAaattcactatCT 271 gaaaattcactatc 11943 11956 2-10-2 271_1 GAaaattcactaTC 272 tgaaaattcactat 11944 11957 2-10-2 272_1 TGaaaattcactAT 273 ctgaaaattcacta 11945 11958 2-10-2 273_1 CTgaaaattcacTA 274 tctgaaaattcact 11946 11959 2-10-2 274_1 TCtgaaaattcaCT 275 tactatatacatct 12176 12189 2-10-2 275_1 TActatatacatCT 276 ctactatatacatc 12177 12190 2-10-2 276_1 CTactatatacaTC 277 tctactatatacat 12178 12191 2-10-2 277_1 TCtactatatacAT 278 gtctactatataca 12179 12192 2-10-2 278_1 GTctactatataCA 279 agtctactatatac 12180 12193 2-10-2 279_1 AGtctactatatAC 280 tagtctactatata 12181 12194 2-10-2 280_1 TAgtctactataTA 281 ctagtctactatat 12182 12195 2-10-2 281_1 CTagtctactatAT 282 actagtctactata 12183 12196 2-10-2 282_1 ACtagtctactaTA 283 aactagtctactat 12184 12197 2-10-2 283_1 AActagtctactAT 284 tattctacccataa 12211 12224 2-10-2 284_1 TAttctacccatAA 285 atattctacccata 12212 12225 2-10-2 285_1 ATattctacccaTA 286 tatattctacccat 12213 12226 2-10-2 286_1 TAtattctacccAT 287 gtatattctaccca 12214 12227 2-10-2 287_1 GTatattctaccCA 288 tgtatattctaccc 12215 12228 2-10-2 288_1 TGtatattctacCC 289 atgtatattctacc 12216 12229 2-10-2 289_1 ATgtatattctaCC 290 ccacacaattccta 12254 12267 2-10-2 290_1 CCacacaattccTA 291 accacacaattcct 12255 12268 2-10-2 291_1 ACcacacaattcCT 292 aaccacacaattcc 12256 12269 2-10-2 292_1 AAccacacaattCC 293 aaaccacacaattc 12257 12270 2-10-2 293_1 AAaccacacaatTC 294 aaaaccacacaatt 12258 12271 2-10-2 294_1 AAaaccacacaaTT 295 gaaaaccacacaat 12259 12272 2-10-2 295_1 GAaaaccacacaAT 296 agaaaaccacacaa 12260 12273 2-10-2 296_1 AGaaaaccacacA A 297 cagaaaaccacaca 12261 12274 2-10-2 297_1 CAgaaaaccacaCA 298 ccagaaaaccacac 12262 12275 2-10-2 298_1 CCagaaaaccacAC 299 tccagaaaaccaca 12263 12276 2-10-2 299_1 TCcagaaaaccaCA 300 aaatccataaaaaa 12327 12340 2-10-2 300_1 AAatccataaaaAA 301 taaatccataaaaa 12328 12341 2-10-2 301_1 TAaatccataaaAA 302 ctaaatccataaaa 12329 12342 2-10-2 302_1 CTaaatccataaAA 303 actaaatccataaa 12330 12343 2-10-2 303_1 ACtaaatccataAA 304 cactaaatccataa 12331 12344 2-10-2 304_1 CActaaatccatAA 305 tcactaaatccata 12332 12345 2-10-2 305_1 TCactaaatccaTA 306 atcactaaatccat 12333 12346 2-10-2 306_1 ATcactaaatccAT 307 tatcactaaatcca 12334 12347 2-10-2 307_1 TAtcactaaatcCA 308 atatcactaaatcc 12335 12348 2-10-2 308_1 ATatcactaaatCC 309 tatatcactaaatc 12336 12349 2-10-2 309_1 TAtatcactaaaTC 310 atatatcactaaat 12337 12350 2-10-2 310_1 ATatatcactaaAT 311 gatatatcactaaa 12338 12351 2-10-2 311_1 GAtatatcactaAA 312 agatatatcactaa 12339 12352 2-10-2 312_1 AGatatatcactAA 313 tagatatatcacta 12340 12353 2-10-2 313_1 TAgatatatcacTA 314 tataaatttctcta 12690 12703 2-10-2 314_1 TAtaaatttctcTA 315 atataaatttctct 12691 12704 2-10-2 315_1 ATataaatttctCT 316 tatataaatttctc 12692 12705 2-10-2 316_1 TAtataaatttcTC 317 atatataaatttct 12693 12706 2-10-2 317_1 ATatataaatttCT 318 catatataaatttc 12694 12707 2-10-2 318_1 CAtatataaattTC 319 tcatatataaattt 12695 12708 2-10-2 319_1 TCatatataaatTT 320 ctccattccaaatt 12739 12752 2-10-2 320_1 CTccattccaaaTT 321 actccattccaaat 12740 12753 2-10-2 321_1 ACtccattccaaAT 322 cactccattccaaa 12741 12754 2-10-2 322_1 CActccattccaAA 323 ccactccattccaa 12742 12755 2-10-2 323_1 CCactccattccAA 324 accactccattcca 12743 12756 2-10-2 324_1 ACcactccattcCA 325 aaccactccattcc 12744 12757 2-10-2 325_1 AAccactccattCC 326 aaaccactccattc 12745 12758 2-10-2 326_1 AAaccactccatTC 327 tcacacaaccatat 13155 13168 2-10-2 327_1 TCacacaaccatAT 328 atcacacaaccata 13156 13169 2-10-2 328_1 ATcacacaaccaTA 329 gatcacacaaccat 13157 13170 2-10-2 329_1 GAtcacacaaccAT 330 agatcacacaacca 13158 13171 2-10-2 330_1 AGatcacacaacCA 331 aagatcacacaacc 13159 13172 2-10-2 331_1 AAgatcacacaaCC 332 aaagatcacacaac 13160 13173 2-10-2 332_1 AAagatcacacaAC 333 aaaagatcacacaa 13161 13174 2-10-2 333_1 AAaagatcacacAA 334 taaaagatcacaca 13162 13175 2-10-2 334_1 TAaaagatcacaCA 335 ttcatttctaaaaa 13297 13310 2-10-2 335_1 TTcatttctaaaAA 336 tttcatttctaaaa 13298 13311 2-10-2 336_1 TTtcatttctaaAA 337 ctttcatttctaaa 13299 13312 2-10-2 337_1 CTttcatttctaAA 338 tctttcatttctaa 13300 13313 2-10-2 338_1 TCtttcatttctAA 339 atctttcatttcta 13301 13314 2-10-2 339_1 ATctttcatttcTA 340 gatctttcatttct 13302 13315 2-10-2 340_1 GAtctttcatttCT 341 tgatctttcatttc 13303 13316 2-10-2 341_1 TGatctttcattTC 342 atgatctttcattt 13304 13317 2-10-2 342_1 ATgatctttcatTT 343 ataaaaacccactt 13990 14003 2-10-2 343_1 ATaaaaacccacTT 344 cataaaaacccact 13991 14004 2-10-2 344_1 CAtaaaaacccaCT 345 acataaaaacccac 13992 14005 2-10-2 345_1 ACataaaaacccAC 346 cacataaaaaccca 13993 14006 2-10-2 346_1 CAcataaaaaccCA 347 tcacataaaaaccc 13994 14007 2-10-2 347_1 TCacataaaaacCC 348 atcacataaaaacc 13995 14008 2-10-2 348_1 ATcacataaaaaCC 349 catcacataaaaac 13996 14009 2-10-2 349_1 CAtcacataaaaAC 350 tcatcacataaaaa 13997 14010 2-10-2 350_1 TCatcacataaaAA 351 gtcatcacataaaa 13998 14011 2-10-2 351_1 GTcatcacataaAA 352 agtcatcacataaa 13999 14012 2-10-2 352_1 AGtcatcacataAA 353 tagtcatcacataa 14000 14013 2-10-2 353_1 TAgtcatcacatAA 354 atagtcatcacata 14001 14014 2-10-2 354_1 ATagtcatcacaTA 355 catagtcatcacat 14002 14015 2-10-2 355_1 CAtagtcatcacAT 356 taaatacaaatcta 14041 14054 2-10-2 356_1 TAaatacaaatcTA 357 ctaaatacaaatct 14042 14055 2-10-2 357_1 CTaaatacaaatCT 358 gctaaatacaaatc 14043 14056 2-10-2 358_1 GCtaaatacaaaTC 359 tgctaaatacaaat 14044 14057 2-10-2 359_1 TGctaaatacaaAT 360 atgctaaatacaaa 14045 14058 2-10-2 360_1 ATgctaaatacaAA 361 tatgctaaatacaa 14046 14059 2-10-2 361_1 TAtgctaaatacAA 362 aatcttacactaaa 14119 14132 2-10-2 362_1 AAtcttacactaAA 363 taatcttacactaa 14120 14133 2-10-2 363_1 TAatcttacactAA 364 ataatcttacacta 14121 14134 2-10-2 364_1 ATaatcttacacTA 365 aataatcttacact 14122 14135 2-10-2 365_1 AAtaatcttacaCT 366 gaataatcttacac 14123 14136 2-10-2 366_1 GAataatcttacAC 367 tgaataatcttaca 14124 14137 2-10-2 367_1 TGaataatcttaCA 368 atgaataatcttac 14125 14138 2-10-2 368_1 ATgaataatcttAC 369 caaaattctaataa 14257 14270 2-10-2 369_1 CAaaattctaatAA 370 tcaaaattctaata 14258 14271 2-10-2 370_1 TCaaaattctaaTA 371 ttcaaaattctaat 14259 14272 2-10-2 371_1 TTcaaaattctaAT 372 attcaaaattctaa 14260 14273 2-10-2 372_1 ATtcaaaattctAA 373 gattcaaaattcta 14261 14274 2-10-2 373_1 GAttcaaaattcTA 374 agattcaaaattct 14262 14275 2-10-2 374_1 AGattcaaaattCT 375 attactacaaccaa 14570 14583 2-10-2 375_1 ATtactacaaccAA 376 cattactacaacca 14571 14584 2-10-2 376_1 CAttactacaacCA 377 ccattactacaacc 14572 14585 2-10-2 377_1 CCattactacaaCC 378 accattactacaac 14573 14586 2-10-2 378_1 ACcattactacaAC 379 aaccattactacaa 14574 14587 2-10-2 379_1 AAccattactacAA 380 aaaccattactaca 14575 14588 2-10-2 380_1 AAaccattactaCA 381 gaaaccattactac 14576 14589 2-10-2 381_1 GAaaccattactAC 382 tgaaaccattacta 14577 14590 2-10-2 382_1 TGaaaccattacTA 383 atgaaaccattact 14578 14591 2-10-2 383_1 ATgaaaccattaCT 384 atttttaaaaacac 15778 15791 2-10-2 384_1 ATttttaaaaacAC 385 aatttttaaaaaca 15779 15792 2-10-2 385_1 AAtttttaaaaaCA 386 taatttttaaaaac 15780 15793 2-10-2 386_1 TAatttttaaaaAC 387 ataatttttaaaaa 15781 15794 2-10-2 387_1 ATaatttttaaaAA 388 cataatttttaaaa 15782 15795 2-10-2 388_1 CAtaatttttaaAA 389 tcataatttttaaa 15783 15796 2-10-2 389_1 TCataatttttaAA 390 atcataatttttaa 15784 15797 2-10-2 390_1 ATcataatttttAA 391 ctttatacaaaaaa 15814 15827 2-10-2 391_1 CTttatacaaaaAA 392 actttatacaaaaa 15815 15828 2-10-2 392_1 ACtttatacaaaAA 393 tactttatacaaaa 15816 15829 2-10-2 393_1 TActttatacaaAA 394 ttactttatacaaa 15817 15830 2-10-2 394_1 TTactttatacaAA 395 cttactttatacaa 15818 15831 2-10-2 395_1 CTtactttatacAA 396 gcttactttataca 15819 15832 2-10-2 396_1 GCttactttataCA 397 tgcttactttatac 15820 15833 2-10-2 397_1 TGcttactttatAC 398 tctcaaaataataa 15877 15890 2-10-2 398_1 TCtcaaaataatAA 399 ctctcaaaataata 15878 15891 2-10-2 399_1 CTctcaaaataaTA 400 tctctcaaaataat 15879 15892 2-10-2 400_1 TCtctcaaaataAT 401 atctctcaaaataa 15880 15893 2-10-2 401_1 ATctctcaaaatAA 402 aatctctcaaaata 15881 15894 2-10-2 402_1 AAtctctcaaaaTA 403 aaatctctcaaaat 15882 15895 2-10-2 403_1 AAatctctcaaaAT 404 taaatctctcaaaa 15883 15896 2-10-2 404_1 TAaatctctcaaAA 405 ttaaatctctcaaa 15884 15897 2-10-2 405_1 TTaaatctctcaAA 406 tttaaatctctcaa 15885 15898 2-10-2 406_1 TTtaaatctctcAA 407 ttttaaatctctca 15886 15899 2-10-2 407_1 TTttaaatctctCA 408 taatactttttcca 16080 16093 2-10-2 408_1 TAatactttttcCA 409 ttaatactttttcc 16081 16094 2-10-2 409_1 TTaatactttttCC 410 gttaatactttttc 16082 16095 2-10-2 410_1 GTtaatacttttTC 411 tgttaatacttttt 16083 16096 2-10-2 411_1 TGttaatactttTT 412 atgttaatactttt 16084 16097 2-10-2 412_1 ATgttaatacttTT 413 ttatcactaccaca 16187 16200 2-10-2 413_1 TTatcactaccaCA 414 tttatcactaccac 16188 16201 2-10-2 414_1 TTtatcactaccAC 415 atttatcactacca 16189 16202 2-10-2 415_1 ATttatcactacCA 416 catttatcactacc 16190 16203 2-10-2 416_1 CAtttatcactaCC 417 tcatttatcactac 16191 16204 2-10-2 417_1 TCatttatcactAC 418 atcatttatcacta 16192 16205 2-10-2 418_1 ATcatttatcacTA 419 catcatttatcact 16193 16206 2-10-2 419_1 CAtcatttatcaCT 420 acatcatttatcac 16194 16207 2-10-2 420_1 ACatcatttatcAC 421 aacatcatttatca 16195 16208 2-10-2 421_1 AAcatcatttatCA 422 taacatcatttatc 16196 16209 2-10-2 422_1 TAacatcatttaTC 423 ttaacatcatttat 16197 16210 2-10-2 423_1 TTaacatcatttAT 424 attaacatcattta 16198 16211 2-10-2 424_1 ATtaacatcattTA 425 aattaacatcattt 16199 16212 2-10-2 425_1 AAttaacatcatTT 426 taattaacatcatt 16200 16213 2-10-2 426_1 TAattaacatcaTT 427 ctaattaacatcat 16201 16214 2-10-2 427_1 CTaattaacatcAT 428 cctaattaacatca 16202 16215 2-10-2 428_1 CCtaattaacatCA 429 ccctaattaacatc 16203 16216 2-10-2 429_1 CCctaattaacaTC 430 gccctaattaacat 16204 16217 2-10-2 430_1 GCcctaattaacAT 431 ggccctaattaaca 16205 16218 2-10-2 431_1 GGccctaattaaCA 432 cggccctaattaac 16206 16219 2-10-2 432_1 CGgccctaattaAC 433 aaacacattttttt 16494 16507 2-10-2 433_1 AAacacatttttTT 434 taaacacatttttt 16495 16508 2-10-2 434_1 TAaacacattttTT 435 ataaacacattttt 16496 16509 2-10-2 435_1 ATaaacacatttTT 436 tataaacacatttt 16497 16510 2-10-2 436_1 TAtaaacacattTT 437 atataaacacattt 16498 16511 2-10-2 437_1 ATataaacacatTT 438 catataaacacatt 16499 16512 2-10-2 438_1 CAtataaacacaTT 439 acatataaacacat 16500 16513 2-10-2 439_1 ACatataaacacAT 440 aacatataaacaca 16501 16514 2-10-2 440_1 AAcatataaacaCA 441 taacatataaacac 16502 16515 2-10-2 441_1 TAacatataaacAC 442 ataacatataaaca 16503 16516 2-10-2 442_1 ATaacatataaaCA 443 tataacatataaac 16504 16517 2-10-2 443_1 TAtaacatataaAC 444 atataacatataaa 16505 16518 2-10-2 444_1 ATataacatataAA 445 catataacatataa 16506 16519 2-10-2 445_1 CAtataacatatAA 446 acatataacatata 16507 16520 2-10-2 446_1 ACatataacataTA 447 cacatataacatat 16508 16521 2-10-2 447_1 CAcatataacatAT 448 tcacatataacata 16509 16522 2-10-2 448_1 TCacatataacaTA 449 atcacatataacat 16510 16523 2-10-2 449_1 ATcacatataacAT 450 tatcacatataaca 16511 16524 2-10-2 450_1 TAtcacatataaCA 451 ctatcacatataac 16512 16525 2-10-2 451_1 CTatcacatataAC 452 actatcacatataa 16513 16526 2-10-2 452_1 ACtatcacatatAA 453 cactatcacatata 16514 16527 2-10-2 453_1 CActatcacataTA 454 gtccaacataactc 16834 16847 2-10-2 454_1 GTccaacataacTC 455 agtccaacataact 16835 16848 2-10-2 455_1 AGtccaacataaCT 456 cagtccaacataac 16836 16849 2-10-2 456_1 CAgtccaacataAC 457 tcagtccaacataa 16837 16850 2-10-2 457_1 TCagtccaacatAA 458 atcagtccaacata 16838 16851 2-10-2 458_1 ATcagtccaacaTA 459 tatcagtccaacat 16839 16852 2-10-2 459_1 TAtcagtccaacAT 460 aaaccctcccaaaa 16921 16934 2-10-2 460_1 AAaccctcccaaAA 461 taaaccctcccaaa 16922 16935 2-10-2 461_1 TAaaccctcccaAA 462 ttaaaccctcccaa 16923 16936 2-10-2 462_1 TTaaaccctcccAA 463 attaaaccctccca 16924 16937 2-10-2 463_1 ATtaaaccctccCA 464 cattaaaccctccc 16925 16938 2-10-2 464_1 CAttaaaccctcCC 465 acattaaaccctcc 16926 16939 2-10-2 465_1 ACattaaaccctCC 466 aacattaaaccctc 16927 16940 2-10-2 466_1 AAcattaaacccTC 467 aaacattaaaccct 16928 16941 2-10-2 467_1 AAacattaaaccCT 468 taaacattaaaccc 16929 16942 2-10-2 468_1 TAaacattaaacCC 469 ataaacattaaacc 16930 16943 2-10-2 469_1 ATaaacattaaaCC 470 tataaacattaaac 16931 16944 2-10-2 470_1 TAtaaacattaaAC 471 ctataaacattaaa 16932 16945 2-10-2 471_1 CTataaacattaAA 472 actataaacattaa 16933 16946 2-10-2 472_1 ACtataaacattAA 473 aactataaacatta 16934 16947 2-10-2 473_1 AActataaacatTA 474 aaactataaacatt 16935 16948 2-10-2 474_1 AAactataaacaTT 475 taaactataaacat 16936 16949 2-10-2 475_1 TAaactataaacAT 476 ttaaactataaaca 16937 16950 2-10-2 476_1 TTaaactataaaCA 477 tttaaactataaac 16938 16951 2-10-2 477_1 TTtaaactataaAC 478 ctttaaactataaa 16939 16952 2-10-2 478_1 CTttaaactataAA 479 gctttaaactataa 16940 16953 2-10-2 479_1 GCtttaaactatAA 480 tgctttaaactata 16941 16954 2-10-2 480_1 TGctttaaactaTA 481 cagcctatcaccac 18018 18031 2-10-2 481_1 CAgcctatcaccAC 482 acagcctatcacca 18019 18032 2-10-2 482_1 ACagcctatcacCA 483 cacagcctatcacc 18020 18033 2-10-2 483_1 CAcagcctatcaCC 484 tcacagcctatcac 18021 18034 2-10-2 484_1 TCacagcctatcAC 485 atcacagcctatca 18022 18035 2-10-2 485_1 ATcacagcctatCA 486 aatcacagcctatc 18023 18036 2-10-2 486_1 AAtcacagcctaTC 487 aaatcacagcctat 18024 18037 2-10-2 487_1 AAatcacagcctAT 488 caaatcacagccta 18025 18038 2-10-2 488_1 CAaatcacagccTA 489 ccaaatcacagcct 18026 18039 2-10-2 489_1 CCaaatcacagcCT 490 cccaaatcacagcc 18027 18040 2-10-2 490_1 CCcaaatcacagCC 491 acccaaatcacagc 18028 18041 2-10-2 491_1 ACccaaatcacaGC 492 cacccaaatcacag 18029 18042 2-10-2 492_1 CAcccaaatcacAG 493 tcacccaaatcaca 18030 18043 2-10-2 493_1 TCacccaaatcaCA 494 gtcacccaaatcac 18031 18044 2-10-2 494_1 GTcacccaaatcAC 495 cgtcacccaaatca 18032 18045 2-10-2 495_1 CGtcacccaaatCA 496 gcgtcacccaaatc 18033 18046 2-10-2 496_1 GCgtcacccaaaTC 497 agcgtcacccaaat 18034 18047 2-10-2 497_1 AGcgtcacccaaAT 498 atcctaaaatcact 18630 18643 2-10-2 498_1 ATcctaaaatcaCT 499 gatcctaaaatcac 18631 18644 2-10-2 499_1 GAtcctaaaatcAC 500 agatcctaaaatca 18632 18645 2-10-2 500_1 AGatcctaaaatCA 501 cagatcctaaaatc 18633 18646 2-10-2 501_1 CAgatcctaaaaTC 502 tcagatcctaaaat 18634 18647 2-10-2 502_1 TCagatcctaaaAT 503 aaaccaatcatcat 19107 19120 2-10-2 503_1 AAaccaatcatcAT 504 aaaaccaatcatca 19108 19121 2-10-2 504_1 AAaaccaatcatCA 505 taaaaccaatcatc 19109 19122 2-10-2 505_1 TAaaaccaatcaTC 506 gtaaaaccaatcat 19110 19123 2-10-2 506_1 GTaaaaccaatcAT 507 agtaaaaccaatca 19111 19124 2-10-2 507_1 AGtaaaaccaatCA 508 aagtaaaaccaatc 19112 19125 2-10-2 508_1 AAgtaaaaccaaTC 509 aaagtaaaaccaat 19113 19126 2-10-2 509_1 AAagtaaaaccaAT 510 catctctactaaaa 20214 20227 2-10-2 510_1 CAtctctactaaAA 511 ccatctctactaaa 20215 20228 2-10-2 511_1 CCatctctactaAA 512 tccatctctactaa 20216 20229 2-10-2 512_1 TCcatctctactAA 513 ttccatctctacta 20217 20230 2-10-2 513_1 TTccatctctacTA 514 cttccatctctact 20218 20231 2-10-2 514_1 CTtccatctctaCT 515 ccttccatctctac 20219 20232 2-10-2 515_1 CCttccatctctAC 516 cccttccatctcta 20220 20233 2-10-2 516_1 CCcttccatctcTA 517 acataacaaaccca 20555 20568 2-10-2 517_1 ACataacaaaccCA 518 tacataacaaaccc 20556 20569 2-10-2 518_1 TAcataacaaacCC 519 ctacataacaaacc 20557 20570 2-10-2 519_1 CTacataacaaaCC 520 actacataacaaac 20558 20571 2-10-2 520_1 ACtacataacaaAC 521 aactacataacaaa 20559 20572 2-10-2 521_1 AActacataacaAA 522 taactacataacaa 20560 20573 2-10-2 522_1 TAactacataacAA 523 ataactacataaca 20561 20574 2-10-2 523_1 ATaactacataaCA 524 aataactacataac 20562 20575 2-10-2 524_1 AAtaactacataAC 525 caataactacataa 20563 20576 2-10-2 525_1 CAataactacatAA 526 acaataactacata 20564 20577 2-10-2 526_1 ACaataactacaTA 527 cacaataactacat 20565 20578 2-10-2 527_1 CAcaataactacAT 528 tcacaataactaca 20566 20579 2-10-2 528_1 TCacaataactaCA 529 ttcacaataactac 20567 20580 2-10-2 529_1 TTcacaataactAC 530 attcacaataacta 20568 20581 2-10-2 530_1 ATtcacaataacTA 531 aattcacaataact 20569 20582 2-10-2 531_1 AAttcacaataaCT 532 gaattcacaataac 20570 20583 2-10-2 532_1 GAattcacaataAC 533 tgaattcacaataa 20571 20584 2-10-2 533_1 TGaattcacaatAA 534 ctaaaacaatctaa 22073 22086 2-10-2 534_1 CTaaaacaatctAA 535 cctaaaacaatcta 22074 22087 2-10-2 535_1 CCtaaaacaatcTA 536 acctaaaacaatct 22075 22088 2-10-2 536_1 ACctaaaacaatCT 537 tacctaaaacaatc 22076 22089 2-10-2 537_1 TAcctaaaacaaTC 538 atacctaaaacaat 22077 22090 2-10-2 538_1 ATacctaaaacaAT 539 tatacctaaaacaa 22078 22091 2-10-2 539_1 TAtacctaaaacAA 540 ctatacctaaaaca 22079 22092 2-10-2 540_1 CTatacctaaaaCA 541 gctatacctaaaac 22080 22093 2-10-2 541_1 GCtatacctaaaAC 542 ttgtaactaaaaat 22254 22267 2-10-2 542_1 TTgtaactaaaaAT 543 cttgtaactaaaaa 22255 22268 2-10-2 543_1 CTtgtaactaaaAA 544 ccttgtaactaaaa 22256 22269 2-10-2 544_1 CCttgtaactaaAA 545 cccttgtaactaaa 22257 22270 2-10-2 545_1 CCcttgtaactaAA 546 ccccttgtaactaa 22258 22271 2-10-2 546_1 CCccttgtaactAA 547 accccttgtaacta 22259 22272 2-10-2 547_1 ACcccttgtaacTA 548 caccccttgtaact 22260 22273 2-10-2 548_1 CAccccttgtaaCT 549 acaccccttgtaac 22261 22274 2-10-2 549_1 ACaccccttgtaAC 550 ttcatatatacatc 22424 22437 2-10-2 550_1 TTcatatatacaTC 551 cttcatatatacat 22425 22438 2-10-2 551_1 CTtcatatatacAT 552 ccttcatatataca 22426 22439 2-10-2 552_1 CCttcatatataCA 553 cccttcatatatac 22427 22440 2-10-2 553_1 CCcttcatatatAC 554 acccttcatatata 22428 22441 2-10-2 554_1 ACccttcatataTA 555 tacccttcatatat 22429 22442 2-10-2 555_1 TAcccttcatatAT 556 ttacccttcatata 22430 22443 2-10-2 556_1 TTacccttcataTA 557 attacccttcatat 22431 22444 2-10-2 557_1 ATtacccttcatAT 558 cattacccttcata 22432 22445 2-10-2 558_1 CAttacccttcaTA 559 acattacccttcat 22433 22446 2-10-2 559_1 ACattacccttcAT 560 tacattacccttca 22434 22447 2-10-2 560_1 TAcattacccttCA 561 tcttatacttacta 23204 23217 2-10-2 561_1 TCttatacttacTA 562 ttcttatacttact 23205 23218 2-10-2 562_1 TTcttatacttaCT 563 attcttatacttac 23206 23219 2-10-2 563_1 ATtcttatacttAC 564 gattcttatactta 23207 23220 2-10-2 564_1 GAttcttatactTA 565 tgattcttatactt 23208 23221 2-10-2 565_1 TGattcttatacTT 566 atgattcttatact 23209 23222 2-10-2 566_1 ATgattcttataCT 567 aacttcactaaaat 23616 23629 2-10-2 567_1 AActtcactaaaAT 568 aaacttcactaaaa 23617 23630 2-10-2 568_1 AAacttcactaaAA 569 taaacttcactaaa 23618 23631 2-10-2 569_1 TAaacttcactaAA 570 ataaacttcactaa 23619 23632 2-10-2 570_1 ATaaacttcactAA 571 aataaacttcacta 23620 23633 2-10-2 571_1 AAtaaacttcacTA 572 taataaacttcact 23621 23634 2-10-2 572_1 TAataaacttcaCT 573 ctaataaacttcac 23622 23635 2-10-2 573_1 CTaataaacttcAC 574 actaataaacttca 23623 23636 2-10-2 574_1 ACtaataaacttCA 575 aactaataaacttc 23624 23637 2-10-2 575_1 AActaataaactTC 576 aatcttctatttta 24108 24121 2-10-2 576_1 AAtcttctatttTA 577 caatcttctatttt 24109 24122 2-10-2 577_1 CAatcttctattTT 578 ccaatcttctattt 24110 24123 2-10-2 578_1 CCaatcttctatTT 579 accaatcttctatt 24111 24124 2-10-2 579_1 ACcaatcttctaTT 580 aaccaatcttctat 24112 24125 2-10-2 580_1 AAccaatcttctAT 581 caaccaatcttcta 24113 24126 2-10-2 581_1 CAaccaatcttcTA 582 gcaaccaatcttct 24114 24127 2-10-2 582_1 GCaaccaatcttCT 583 tgcaaccaatcttc 24115 24128 2-10-2 583_1 TGcaaccaatctTC 584 ctgcaaccaatctt 24116 24129 2-10-2 584_1 CTgcaaccaatcTT 585 actgcaaccaatct 24117 24130 2-10-2 585_1 ACtgcaaccaatCT 586 aactgcaaccaatc 24118 24131 2-10-2 586_1 AActgcaaccaaTC 587 taactgcaaccaat 24119 24132 2-10-2 587_1 TAactgcaaccaAT 588 tacaacacacatca 24335 24348 2-10-2 588_1 TAcaacacacatCA 589 atacaacacacatc 24336 24349 2-10-2 589_1 ATacaacacacaTC 590 aatacaacacacat 24337 24350 2-10-2 590_1 AAtacaacacacAT 591 gaatacaacacaca 24338 24351 2-10-2 591_1 GAatacaacacaCA 592 tgaatacaacacac 24339 24352 2-10-2 592_1 TGaatacaacacAC 593 atgaatacaacaca 24340 24353 2-10-2 593_1 ATgaatacaacaCA 594 cctaataaaatata 24499 24512 2-10-2 594_1 CCtaataaaataTA 595 tcctaataaaatat 24500 24513 2-10-2 595_1 TCctaataaaatAT 596 ctcctaataaaata 24501 24514 2-10-2 596_1 CTcctaataaaaTA 597 actcctaataaaat 24502 24515 2-10-2 597_1 ACtcctaataaaAT 598 tactcctaataaaa 24503 24516 2-10-2 598_1 TActcctaataaAA 599 ctactcctaataaa 24504 24517 2-10-2 599_1 CTactcctaataAA 600 actactcctaataa 24505 24518 2-10-2 600_1 ACtactcctaatAA 601 aactactcctaata 24506 24519 2-10-2 601_1 AActactcctaaTA 602 taactactcctaat 24507 24520 2-10-2 602_1 TAactactcctaAT 603 ataactactcctaa 24508 24521 2-10-2 603_1 ATaactactcctAA 604 tataactactccta 24509 24522 2-10-2 604_1 TAtaactactccTA 605 atataactactcct 24510 24523 2-10-2 605_1 ATataactactcCT 606 aatataactactcc 24511 24524 2-10-2 606_1 AAtataactactCC 607 aaatataactactc 24512 24525 2-10-2 607_1 AAatataactacTC 608 aaaatataactact 24513 24526 2-10-2 608_1 AAaatataactaCT 609 aaaaatataactac 24514 24527 2-10-2 609_1 AAaaatataactAC 610 taaaaatataacta 24515 24528 2-10-2 610_1 TAaaaatataacTA 611 gtaaaaatataact 24516 24529 2-10-2 611_1 GTaaaaatataaCT 612 agtaaaaatataac 24517 24530 2-10-2 612_1 AGtaaaaatataAC 613 actgatacccacaa 24593 24606 2-10-2 613_1 ACtgatacccacAA 614 aactgatacccaca 24594 24607 2-10-2 614_1 AActgatacccaCA 615 caactgatacccac 24595 24608 2-10-2 615_1 CAactgatacccAC 616 tcaactgataccca 24596 24609 2-10-2 616_1 TCaactgataccCA 617 atcactaaaaaact 24752 24765 2-10-2 617_1 ATcactaaaaaaCT 618 tatcactaaaaaac 24753 24766 2-10-2 618_1 TAtcactaaaaaAC 619 atatcactaaaaaa 24754 24767 2-10-2 619_1 ATatcactaaaaAA 620 tatatcactaaaaa 24755 24768 2-10-2 620_1 TAtatcactaaaAA 621 ttatatcactaaaa 24756 24769 2-10-2 621_1 TTatatcactaaAA 622 tttatatcactaaa 24757 24770 2-10-2 622_1 TTtatatcactaAA 623 gtttatatcactaa 24758 24771 2-10-2 623_1 GTttatatcactAA 624 aaacttttaattaa 24850 24863 2-10-2 624_1 AAacttttaattAA 625 caaacttttaatta 24851 24864 2-10-2 625_1 CAaacttttaatTA 626 tcaaacttttaatt 24852 24865 2-10-2 626_1 TCaaacttttaaTT 627 ttcaaacttttaat 24853 24866 2-10-2 627_1 TTcaaacttttaAT 628 cttcaaacttttaa 24854 24867 2-10-2 628_1 CTtcaaacttttAA 629 acttcaaactttta 24855 24868 2-10-2 629_1 ACttcaaactttTA 630 cacttcaaactttt 24856 24869 2-10-2 630_1 CActtcaaacttTT 631 ccacttcaaacttt 24857 24870 2-10-2 631_1 CCacttcaaactTT 632 cccacttcaaactt 24858 24871 2-10-2 632_1 CCcacttcaaacTT 633 acccacttcaaact 24859 24872 2-10-2 633_1 ACccacttcaaaCT 634 aacccacttcaaac 24860 24873 2-10-2 634_1 AAcccacttcaaAC 635 aaacccacttcaaa 24861 24874 2-10-2 635_1 AAacccacttcaAA 636 aaaacccacttcaa 24862 24875 2-10-2 636_1 AAaacccacttcAA 637 aaaaacccacttca 24863 24876 2-10-2 637_1 AAaaacccacttCA 638 aaaaaacccacttc 24864 24877 2-10-2 638_1 AAaaaacccactTC 639 caaaaaacccactt 24865 24878 2-10-2 639_1 CAaaaaacccacTT 640 acaaaaaacccact 24866 24879 2-10-2 640_1 ACaaaaaacccaCT 641 aacaaaaaacccac 24867 24880 2-10-2 641_1 AAcaaaaaacccAC 642 aaacaaaaaaccca 24868 24881 2-10-2 642_1 AAacaaaaaaccCA 643 aaaacaaaaaaccc 24869 24882 2-10-2 643_1 AAaacaaaaaacCC 644 atcttcccattaat 24976 24989 2-10-2 644_1 ATcttcccattaAT 645 aatcttcccattaa 24977 24990 2-10-2 645_1 AAtcttcccattAA 646 taatcttcccatta 24978 24991 2-10-2 646_1 TAatcttcccatTA 647 ataatcttcccatt 24979 24992 2-10-2 647_1 ATaatcttcccaTT 648 aataatcttcccat 24980 24993 2-10-2 648_1 AAtaatcttcccAT 649 aaataatcttccca 24981 24994 2-10-2 649_1 AAataatcttccCA 650 aaaataatcttccc 24982 24995 2-10-2 650_1 AAaataatcttcCC 651 tattaatcaaaaat 25057 25070 2-10-2 651_1 TAttaatcaaaaAT 652 ctattaatcaaaaa 25058 25071 2-10-2 652_1 CTattaatcaaaAA 653 tctattaatcaaaa 25059 25072 2-10-2 653_1 TCtattaatcaaAA 654 ctctattaatcaaa 25060 25073 2-10-2 654_1 CTctattaatcaAA 655 actctattaatcaa 25061 25074 2-10-2 655_1 ACtctattaatcAA 656 gactctattaatca 25062 25075 2-10-2 656_1 GActctattaatCA 657 tattctactcttct 25433 25446 2-10-2 657_1 TAttctactcttCT 658 atattctactcttc 25434 25447 2-10-2 658_1 ATattctactctTC 659 aatattctactctt 25435 25448 2-10-2 659_1 AAtattctactcTT 660 gaatattctactct 25436 25449 2-10-2 660_1 GAatattctactCT 661 agaatattctactc 25437 25450 2-10-2 661_1 AGaatattctacTC 662 atttaccaattcaa 25508 25521 2-10-2 662_1 ATttaccaattcAA 663 tatttaccaattca 25509 25522 2-10-2 663_1 TAtttaccaattCA 664 gtatttaccaattc 25510 25523 2-10-2 664_1 GTatttaccaatTC 665 tgtatttaccaatt 25511 25524 2-10-2 665_1 TGtatttaccaaTT 666 ctgtatttaccaat 25512 25525 2-10-2 666_1 CTgtatttaccaAT 667 actgtatttaccaa 25513 25526 2-10-2 667_1 ACtgtatttaccAA 668 ttataccatcaaat 27100 27113 2-10-2 668_1 TTataccatcaaAT 669 attataccatcaaa 27101 27114 2-10-2 669_1 ATtataccatcaAA 670 cattataccatcaa 27102 27115 2-10-2 670_1 CAttataccatcAA 671 tcattataccatca 27103 27116 2-10-2 671_1 TCattataccatCA 672 ttcattataccatc 27104 27117 2-10-2 672_1 TTcattataccaTC 673 cttcattataccat 27105 27118 2-10-2 673_1 CTtcattataccAT 674 tcttcattatacca 27106 27119 2-10-2 674_1 TCttcattatacCA 675 ttcttcattatacc 27107 27120 2-10-2 675_1 TTcttcattataCC 676 tttcttcattatac 27108 27121 2-10-2 676_1 TTtcttcattatAC 677 ttttcttcattata 27109 27122 2-10-2 677_1 TTttcttcattaTA 678 attttcttcattat 27110 27123 2-10-2 678_1 ATtttcttcattAT 679 tattttcttcatta 27111 27124 2-10-2 679_1 TAttttcttcatTA 680 atattttcttcatt 27112 27125 2-10-2 680_1 ATattttcttcaTT 681 aatattttcttcat 27113 27126 2-10-2 681_1 AAtattttcttcAT 682 aaatattttcttca 27114 27127 2-10-2 682_1 AAatattttcttCA 683 taaatattttcttc 27115 27128 2-10-2 683_1 TAaatattttctTC 684 aataatccaaactt 27772 27785 2-10-2 684_1 AAtaatccaaacTT 685 aaataatccaaact 27773 27786 2-10-2 685_1 AAataatccaaaCT 686 aaaataatccaaac 27774 27787 2-10-2 686_1 AAaataatccaaAC 687 caaaataatccaaa 27775 27788 2-10-2 687_1 CAaaataatccaAA 688 acaaaataatccaa 27776 27789 2-10-2 688_1 ACaaaataatccAA 689 tacaaaataatcca 27777 27790 2-10-2 689_1 TAcaaaataatcCA 690 ttacaaaataatcc 27778 27791 2-10-2 690_1 TTacaaaataatCC 691 gttacaaaataatc 27779 27792 2-10-2 691_1 GTtacaaaataaTC 692 tgttacaaaataat 27780 27793 2-10-2 692_1 TGttacaaaataAT 693 ttttacattaacta 27935 27948 2-10-2 693_1 TTttacattaacTA 694 tttttacattaact 27936 27949 2-10-2 694_1 TTIttacattaaCT 695 ttttttacattaac 27937 27950 2-10-2 695_1 TTttttacattaAC 696 attttttacattaa 27938 27951 2-10-2 696_1 ATtttttacattAA 697 tattttttacatta 27939 27952 2-10-2 697_1 TAttttttacatTA 698 ttattttttacatt 27940 27953 2-10-2 698_1 TTattttttacaTT 699 aaatactaacatca 29299 29312 2-10-2 699_1 AAatactaacatCA 700 aaaatactaacatc 29300 29313 2-10-2 700_1 AAaatactaacaTC 701 caaaatactaacat 29301 29314 2-10-2 701_1 CAaaatactaacAT 702 ccaaaatactaaca 29302 29315 2-10-2 702_1 CCaaaatactaaCA 703 gccaaaatactaac 29303 29316 2-10-2 703_1 GCcaaaatactaAC 704 tgccaaaatactaa 29304 29317 2-10-2 704_1 TGccaaaatactAA 705 tccattcattttat 29415 29428 2-10-2 705_1 TCcattcattttAT 706 atccattcatttta 29416 29429 2-10-2 706_1 ATccattcatttTA 707 catccattcatttt 29417 29430 2-10-2 707_1 CAtccattcattTT 708 acatccattcattt 29418 29431 2-10-2 708_1 ACatccattcatTT 709 cacatccattcatt 29419 29432 2-10-2 709_1 CAcatccattcaTT 710 ccacatccattcat 29420 29433 2-10-2 710_1 CCacatccattcAT 711 gccacatccattca 29421 29434 2-10-2 711_1 GCcacatccattCA 712 tgccacatccattc 29422 29435 2-10-2 712_1 TGccacatccatTC 713 atgccacatccatt 29423 29436 2-10-2 713_1 ATgccacatccaTT 714 tatgccacatccat 29424 29437 2-10-2 714_1 TAtgccacatccAT 715 ttatgccacatcca 29425 29438 2-10-2 715_1 TTatgccacatcCA 716 attatgccacatcc 29426 29439 2-10-2 716_1 ATtatgccacatCC 717 tcttaactcttctc 30753 30766 2-10-2 717_1 TCttaactcttcTC 718 ttcttaactcttct 30754 30767 2-10-2 718_1 TTcttaactcttCT 719 gttcttaactcttc 30755 30768 2-10-2 719_1 GTtcttaactctTC 720 agttcttaactctt 30756 30769 2-10-2 720_1 AGttcttaactcTT 721 tagttcttaactct 30757 30770 2-10-2 721_1 TAgttcttaactCT 722 caaatactcaaaaa 31029 31042 2-10-2 722_1 CAaatactcaaaAA 723 tcaaatactcaaaa 31030 31043 2-10-2 723_1 TCaaatactcaaAA 724 ttcaaatactcaaa 31031 31044 2-10-2 724_1 TTcaaatactcaAA 725 cttcaaatactcaa 31032 31045 2-10-2 725_1 CTtcaaatactcAA 726 gcttcaaatactca 31033 31046 2-10-2 726_1 GCttcaaatactCA 727 agcttcaaatactc 31034 31047 2-10-2 727_1 AGcttcaaatacTC 728 aagcttcaaatact 31035 31048 2-10-2 728_1 AAgcttcaaataCT 729 cctcattacccatt 32059 32072 2-10-2 729_1 CCtcattacccaTT 730 tcctcattacccat 32060 32073 2-10-2 730_1 TCctcattacccAT 731 atcctcattaccca 32061 32074 2-10-2 731_1 ATcctcattaccCA 732 tatcctcattaccc 32062 32075 2-10-2 732_1 TAtcctcattacCC 733 atatcctcattacc 32063 32076 2-10-2 733_1 ATatcctcattaCC 734 aatatcctcattac 32064 32077 2-10-2 734_1 AAtatcctcattAC 735 taatatcctcatta 32065 32078 2-10-2 735_1 TAatatcctcatTA 736 ttaatatcctcatt 32066 32079 2-10-2 736_1 TTaatatcctcaTT 737 tttaatatcctcat 32067 32080 2-10-2 737_1 TTtaatatcctcAT 738 atttaatatcctca 32068 32081 2-10-2 738_1 ATttaatatcctCA 739 aatttaatatcctc 32069 32082 2-10-2 739_1 AAtttaatatccTC 740 aaatttaatatcct 32070 32083 2-10-2 740_1 AAatttaatatcCT 741 taaatttaatatcc 32071 32084 2-10-2 741_1 TAaatttaatatCC 742 ttaaatttaatatc 32072 32085 2-10-2 742_1 TTaaatttaataTC 743 cttaaatttaatat 32073 32086 2-10-2 743_1 CTtaaatttaatAT 744 tcttaaatttaata 32074 32087 2-10-2 744_1 TCttaaatttaaTA 745 ttcttaaatttaat 32075 32088 2-10-2 745_1 TTcttaaatttaAT 746 gttcttaaatttaa 32076 32089 2-10-2 746_1 GTtcttaaatttAA 747 ttattctactttta 33431 33444 2-10-2 747_1 TTattctactttTA 748 tttattctactttt 33432 33445 2-10-2 748_1 TTtattctacttTT 749 ctttattctacttt 33433 33446 2-10-2 749_1 CTttattctactTT 750 cctttattctactt 33434 33447 2-10-2 750_1 CCtttattctacTT 751 gcctttattctact 33435 33448 2-10-2 751_1 GCctttattctaCT 752 aacaattattaata 33797 33810 2-10-2 752_1 AAcaattattaaTA 753 caacaattattaat 33798 33811 2-10-2 753_1 CAacaattattaAT 754 gcaacaattattaa 33799 33812 2-10-2 754_1 GCaacaattattAA 755 agcaacaattatta 33800 33813 2-10-2 755_1 AGcaacaattatTA 756 cagcaacaattatt 33801 33814 2-10-2 756_1 CAgcaacaattaTT 757 ccagcaacaattat 33802 33815 2-10-2 757_1 CCagcaacaattAT 758 accagcaacaatta 33803 33816 2-10-2 758_1 ACcagcaacaatTA 759 aaaccaaaacttac 33963 33976 2-10-2 759_1 AAaccaaaacttAC 760 aaaaccaaaactta 33964 33977 2-10-2 760_1 AAaaccaaaactTA 761 aaaaaccaaaactt 33965 33978 2-10-2 761_1 AAaaaccaaaacTT 762 caaaaaccaaaact 33966 33979 2-10-2 762_1 CAaaaaccaaaaCT 763 ccaaaaaccaaaac 33967 33980 2-10-2 763_1 CCaaaaaccaaaAC 764 accaaaaaccaaaa 33968 33981 2-10-2 764_1 ACcaaaaaccaaAA 765 aaccaaaaaccaaa 33969 33982 2-10-2 765_1 AAccaaaaaccaA A 766 aaaccaaaaaccaa 33970 33983 2-10-2 766_1 AAaccaaaaaccA A 767 atctaaaacacttc 34050 34063 2-10-2 767_1 ATctaaaacactTC 768 aatctaaaacactt 34051 34064 2-10-2 768_1 AAtctaaaacacTT 769 aaatctaaaacact 34052 34065 2-10-2 769_1 AAatctaaaacaCT 770 caaatctaaaacac 34053 34066 2-10-2 770_1 CAaatctaaaacAC 771 ccaaatctaaaaca 34054 34067 2-10-2 771_1 CCaaatctaaaaCA 772 cccaaatctaaaac 34055 34068 2-10-2 772_1 CCcaaatctaaaAC 773 ccccaaatctaaaa 34056 34069 2-10-2 773_1 CCccaaatctaaAA 774 accccaaatctaaa 34057 34070 2-10-2 774_1 ACcccaaatctaAA 775 aaccccaaatctaa 34058 34071 2-10-2 775_1 AAccccaaatctAA 776 aaaccccaaatcta 34059 34072 2-10-2 776_1 AAaccccaaatcTA 777 attcacaaatccta 34075 34088 2-10-2 777_1 ATtcacaaatccTA 778 tattcacaaatcct 34076 34089 2-10-2 778_1 TAttcacaaatcCT 779 atattcacaaatcc 34077 34090 2-10-2 779_1 ATattcacaaatCC 780 aatattcacaaatc 34078 34091 2-10-2 780_1 AAtattcacaaaTC 781 aaatattcacaaat 34079 34092 2-10-2 781_1 AAatattcacaaAT 782 caaatattcacaaa 34080 34093 2-10-2 782_1 CAaatattcacaAA 783 gcaaatattcacaa 34081 34094 2-10-2 783_1 GCaaatattcacAA 784 aacacacattatca 34537 34550 2-10-2 784_1 AAcacacattatCA 785 taacacacattatc 34538 34551 2-10-2 785_1 TAacacacattaTC 786 ttaacacacattat 34539 34552 2-10-2 786_1 TTaacacacattAT 787 tttaacacacatta 34540 34553 2-10-2 787_1 TTtaacacacatTA 788 atttaacacacatt 34541 34554 2-10-2 788_1 ATttaacacacaTT 789 tatttaacacacat 34542 34555 2-10-2 789_1 TAtttaacacacAT 790 ctatttaacacaca 34543 34556 2-10-2 790_1 CTatttaacacaCA 791 actatttaacacac 34544 34557 2-10-2 791_1 ACtatttaacacAC 792 tactatttaacaca 34545 34558 2-10-2 792_1 TActatttaacaCA 793 ctactatttaacac 34546 34559 2-10-2 793_1 CTactatttaacAC 794 actactatttaaca 34547 34560 2-10-2 794_1 ACtactatttaaCA 795 aactactatttaac 34548 34561 2-10-2 795_1 AActactatttaAC 796 aaactactatttaa 34549 34562 2-10-2 796_1 AAactactatttAA 797 aaaactactattta 34550 34563 2-10-2 797_1 AAaactactattTA 798 gaaaactactattt 34551 34564 2-10-2 798_1 GAaaactactatTT 799 tgaaaactactatt 34552 34565 2-10-2 799_1 TGaaaactactaTT 800 aaataacctatcat 35309 35322 2-10-2 800_1 AAataacctatcAT 801 aaaataacctatca 35310 35323 2-10-2 801_1 AAaataacctatCA 802 caaaataacctatc 35311 35324 2-10-2 802_1 CAaaataacctaTC 803 acaaaataacctat 35312 35325 2-10-2 803_1 ACaaaataacctAT 804 cacaaaataaccta 35313 35326 2-10-2 804_1 CAcaaaataaccTA 805 tcacaaaataacct 35314 35327 2-10-2 805_1 TCacaaaataacCT 806 atcacaaaataacc 35315 35328 2-10-2 806_1 ATcacaaaataaCC 807 catcacaaaataac 35316 35329 2-10-2 807_1 CAtcacaaaataAC 808 tcatcacaaaataa 35317 35330 2-10-2 808_1 TCatcacaaaatAA 809 ttcatcacaaaata 35318 35331 2-10-2 809_1 TTcatcacaaaaTA 810 tttcatcacaaaat 35319 35332 2-10-2 810_1 TTtcatcacaaaAT 811 ttttcatcacaaaa 35320 35333 2-10-2 811_1 TTttcatcacaaAA 812 attttcatcacaaa 35321 35334 2-10-2 812_1 ATtttcatcacaAA 813 tattttcatcacaa 35322 35335 2-10-2 813_1 TAttttcatcacAA 814 gtattttcatcaca 35323 35336 2-10-2 814_1 GTattttcatcaCA 815 atttaaatttatca 35354 35367 2-10-2 815_1 ATttaaatttatCA 816 aatttaaatttatc 35355 35368 2-10-2 816_1 AAtttaaatttaTC 817 aaatttaaatttat 35356 35369 2-10-2 817_1 AAatttaaatttAT 818 aaaatttaaattta 35357 35370 2-10-2 818_1 AAaatttaaattTA 819 taaaatttaaattt 35358 35371 2-10-2 819_1 TAaaatttaaatTT 820 ataaaatttaaatt 35359 35372 2-10-2 820_1 ATaaaatttaaaTT 821 cataaaatttaaat 35360 35373 2-10-2 821_1 CAtaaaatttaaAT 822 acataaaatttaaa 35361 35374 2-10-2 822_1 ACataaaatttaAA 823 ctactaatattcat 36332 36345 2-10-2 823_1 CTactaatattcAT 824 cctactaatattca 36333 36346 2-10-2 824_1 CCtactaatattCA 825 acctactaatattc 36334 36347 2-10-2 825_1 ACctactaatatTC 826 cacctactaatatt 36335 36348 2-10-2 826_1 CAcctactaataTT 827 tcacctactaatat 36336 36349 2-10-2 827_1 TCacctactaatAT 828 ttcacctactaata 36337 36350 2-10-2 828_1 TTcacctactaaTA 829 tttcacctactaat 36338 36351 2-10-2 829_1 TTtcacctactaAT 830 ttttcacctactaa 36339 36352 2-10-2 830_1 TTttcacctactAA 831 tttttcacctacta 36340 36353 2-10-2 831_1 TTtttcacctacTA 832 atttttcacctact 36341 36354 2-10-2 832_1 ATttttcacctaCT 833 tatttttcacctac 36342 36355 2-10-2 833_1 TAtttttcacctAC 834 ttatttttcaccta 36343 36356 2-10-2 834_1 TTatttttcaccTA 835 tttatttttcacct 36344 36357 2-10-2 835_1 TTtatttttcacCT 836 ttctactactaatt 36468 36481 2-10-2 836_1 TTctactactaaTT 837 cttctactactaat 36469 36482 2-10-2 837_1 CTtctactactaAT 838 acttctactactaa 36470 36483 2-10-2 838_1 ACttctactactAA 839 aacttctactacta 36471 36484 2-10-2 839_1 AActtctactacTA 840 caacttctactact 36472 36485 2-10-2 840_1 CAacttctactaCT 841 tcaacttctactac 36473 36486 2-10-2 841_1 TCaacttctactAC 842 ctcaacttctacta 36474 36487 2-10-2 842_1 CTcaacttctacTA 843 tctcaacttctact 36475 36488 2-10-2 843_1 TCtcaacttctaCT 844 ctctcaacttctac 36476 36489 2-10-2 844_1 CTctcaacttctAC 845 tctctcaacttcta 36477 36490 2-10-2 845_1 TCtctcaacttcTA 846 ttctctcaacttct 36478 36491 2-10-2 846_1 TTctctcaacttCT 847 tttctctcaacttc 36479 36492 2-10-2 847_1 TTtctctcaactTC 848 ttttctctcaactt 36480 36493 2-10-2 848_1 TTttctctcaacTT 849 tttttctctcaact 36481 36494 2-10-2 849_1 TTtttctctcaaCT 850 ctttttctctcaac 36482 36495 2-10-2 850_1 CTttttctctcaAC 851 actttttctctcaa 36483 36496 2-10-2 851_1 ACtttttctctcAA 852 tactttttctctca 36484 36497 2-10-2 852_1 TActttttctctCA 853 ttactttttctctc 36485 36498 2-10-2 853_1 TTactttttctcTC 854 gttactttttctct 36486 36499 2-10-2 854_1 GTtactttttctCT 855 agttactttttctc 36487 36500 2-10-2 855_1 AGttactttttcTC 856 cattcccattaaca 36788 36801 2-10-2 856_1 CAttcccattaaCA 857 acattcccattaac 36789 36802 2-10-2 857_1 ACattcccattaAC 858 tacattcccattaa 36790 36803 2-10-2 858_1 TAcattcccattAA 859 ttacattcccatta 36791 36804 2-10-2 859_1 TTacattcccatTA 860 tttacattcccatt 36792 36805 2-10-2 860_1 TTtacattcccaTT 861 ttttacattcccat 36793 36806 2-10-2 861_1 TTttacattcccAT 862 cttttacattccca 36794 36807 2-10-2 862_1 CTtttacattccCA 863 acttttacattccc 36795 36808 2-10-2 863_1 ACttttacattcCC 864 cacttttacattcc 36796 36809 2-10-2 864_1 CActtttacattCC 865 acacttttacattc 36797 36810 2-10-2 865_1 ACacttttacatTC 866 tacacttttacatt 36798 36811 2-10-2 866_1 TAcacttttacaTT 867 gtacacttttacat 36799 36812 2-10-2 867_1 GTacacttttacAT 868 tgtacacttttaca 36800 36813 2-10-2 868_1 TGtacacttttaCA 869 tttatcaaaaaaat 36834 36847 2-10-2 869_1 TTtatcaaaaaaAT 870 atttatcaaaaaaa 36835 36848 2-10-2 870_1 ATttatcaaaaaAA 871 catttatcaaaaaa 36836 36849 2-10-2 871_1 CAtttatcaaaaAA 872 acatttatcaaaaa 36837 36850 2-10-2 872_1 ACatttatcaaaAA 873 tacatttatcaaaa 36838 36851 2-10-2 873_1 TAcatttatcaaAA 874 atacatttatcaaa 36839 36852 2-10-2 874_1 ATacatttatcaAA 875 tatacatttatcaa 36840 36853 2-10-2 875_1 TAtacatttatcAA 876 acatcttccaattt 38848 38861 2-10-2 876_1 ACatcttccaatTT 877 tacatcttccaatt 38849 38862 2-10-2 877_1 TAcatcttccaaTT 878 ttacatcttccaat 38850 38863 2-10-2 878_1 TTacatcttccaAT 879 tttacatcttccaa 38851 38864 2-10-2 879_1 TTtacatcttccAA 880 atttacatcttcca 38852 38865 2-10-2 880_1 ATttacatcttcCA 881 tatttacatcttcc 38853 38866 2-10-2 881_1 TAtttacatcttCC 882 ttatttacatcttc 38854 38867 2-10-2 882_1 TTatttacatctTC 883 cttatttacatctt 38855 38868 2-10-2 883_1 CTtatttacatcTT 884 tcttatttacatct 38856 38869 2-10-2 884_1 TCttatttacatCT 885 atcttatttacatc 38857 38870 2-10-2 885_1 ATcttatttacaTC 886 aatcttatttacat 38858 38871 2-10-2 886_1 AAtcttatttacAT 887 gaatcttatttaca 38859 38872 2-10-2 887_1 GAatcttatttaCA 888 tgaatcttatttac 38860 38873 2-10-2 888_1 TGaatcttatttAC 889 ttcccttcactcct 40071 40084 2-10-2 889_1 TTcccttcactcCT 890 tttcccttcactcc 40072 40085 2-10-2 890_1 TTtcccttcactCC 891 ttttcccttcactc 40073 40086 2-10-2 891_1 TTttcccttcacTC 892 attttcccttcact 40074 40087 2-10-2 892_1 ATtttcccttcaCT 893 aattttcccttcac 40075 40088 2-10-2 893_1 AAttttcccttcAC 894 taattttcccttca 40076 40089 2-10-2 894_1 TAattttcccttCA 895 ttaattttcccttc 40077 40090 2-10-2 895_1 TTaattttccctTC 896 gttaattttccctt 40078 40091 2-10-2 896_1 GTtaattttcccTT 897 tttatcatttcttt 40150 40163 2-10-2 897_1 TTtatcatttctTT 898 ttttatcatttctt 40151 40164 2-10-2 898_1 TTttatcatttcTT 899 cttttatcatttct 40152 40165 2-10-2 899_1 CTtttatcatttCT 900 tcttttatcatttc 40153 40166 2-10-2 900_1 TCttttatcattTC 901 ttcttttatcattt 40154 40167 2-10-2 901_1 TTcttttatcatTT 902 cttcttttatcatt 40155 40168 2-10-2 902_1 CTtcttttatcaTT 903 acttcttttatcat 40156 40169 2-10-2 903_1 ACttcttttatcAT 904 tacttcttttatca 40157 40170 2-10-2 904_1 TActtcttttatCA 905 ttacttcttttatc 40158 40171 2-10-2 905_1 TTacttcttttaTC 906 attacttcttttat 40159 40172 2-10-2 906_1 ATtacttcttttAT 907 aattacttctttta 40160 40173 2-10-2 907_1 AAttacttctttTA 908 aaattacttctttt 40161 40174 2-10-2 908_1 AAattacttcttTT 909 aaaattacttcttt 40162 40175 2-10-2 909_1 AAaattacttctTT 910 caaaattacttctt 40163 40176 2-10-2 910_1 CAaaattacttcTT 911 ccaaaattacttct 40164 40177 2-10-2 911_1 CCaaaattacttCT 912 tccaaaattacttc 40165 40178 2-10-2 912_1 TCcaaaattactTC 913 ttccaaaattactt 40166 40179 2-10-2 913_1 TTccaaaattacTT 914 gttccaaaattact 40167 40180 2-10-2 914_1 GTtccaaaattaCT 915 tgttccaaaattac 40168 40181 2-10-2 915_1 TGttccaaaattAC 916 atgttccaaaatta 40169 40182 2-10-2 916_1 ATgttccaaaatTA 917 ttactctttttatt 40201 40214 2-10-2 917_1 TTactctttttaTT 918 tttactctttttat 40202 40215 2-10-2 918_1 TTtactctttttAT 919 ttttactcttttta 40203 40216 2-10-2 919_1 TTttactcttttTA 920 attttactcttttt 40204 40217 2-10-2 920_1 ATtttactctttTT 921 tattttactctttt 40205 40218 2-10-2 921_1 TAttttactcttTT 922 atattttactcttt 40206 40219 2-10-2 922_1 ATattttactctTT 923 catattttactctt 40207 40220 2-10-2 923_1 CAtattttactcTT 924 ccatattttactct 40208 40221 2-10-2 924_1 CCatattttactCT 925 cccatattttactc 40209 40222 2-10-2 925_1 CCcatattttacTC 926 acccatattttact 40210 40223 2-10-2 926_1 ACccatattttaCT 927 tacccatattttac 40211 40224 2-10-2 927_1 TAcccatattttAC 928 ttacccatatttta 40212 40225 2-10-2 928_1 TTacccatatttTA 929 tttacccatatttt 40213 40226 2-10-2 929_1 TTtacccatattTT 930 gtttacccatattt 40214 40227 2-10-2 930_1 GTttacccatatTT 931 tgtttacccatatt 40215 40228 2-10-2 931_1 TGtttacccataTT 932 gttacctcccttta 40368 40381 2-10-2 932_1 GTtacctcccttTA 933 ggttacctcccttt 40369 40382 2-10-2 933_1 GGttacctccctTT 934 aggttacctccctt 40370 40383 2-10-2 934_1 AGgttacctcccTT 935 caaactaaaaccta 41659 41672 2-10-2 935_1 CAaactaaaaccTA 936 tcaaactaaaacct 41660 41673 2-10-2 936_1 TCaaactaaaacCT 937 atcaaactaaaacc 41661 41674 2-10-2 937_1 ATcaaactaaaaCC 938 gatcaaactaaaac 41662 41675 2-10-2 938_1 GAtcaaactaaaAC 939 agatcaaactaaaa 41663 41676 2-10-2 939_1 AGatcaaactaaAA 940 aagatcaaactaaa 41664 41677 2-10-2 940_1 AAgatcaaactaAA 941 ccaatttcacccaa 41699 41712 2-10-2 941_1 CCaatttcacccAA 942 cccaatttcaccca 41700 41713 2-10-2 942_1 CCcaatttcaccCA 943 gcccaatttcaccc 41701 41714 2-10-2 943_1 GCccaatttcacCC 944 tgcccaatttcacc 41702 41715 2-10-2 944_1 TGcccaatttcaCC 945 ttgcccaatttcac 41703 41716 2-10-2 945_1 TTgcccaatttcAC 946 caactttctatttt 41777 41790 2-10-2 946_1 CAactttctattTT 947 ccaactttctattt 41778 41791 2-10-2 947_1 CCaactttctatTT 948 cccaactttctatt 41779 41792 2-10-2 948_1 CCcaactttctaTT 949 acccaactttctat 41780 41793 2-10-2 949_1 ACccaactttctAT 950 aacccaactttcta 41781 41794 2-10-2 950_1 AAcccaactttcTA 951 aaacccaactttct 41782 41795 2-10-2 951_1 AAacccaactttCT 952 aaaacccaactttc 41783 41796 2-10-2 952_1 AAaacccaacttTC 953 aaaaacccaacttt 41784 41797 2-10-2 953_1 AAaaacccaactTT 954 caaaaacccaactt 41785 41798 2-10-2 954_1 CAaaaacccaacTT 955 acaaaaacccaact 41786 41799 2-10-2 955_1 ACaaaaacccaaCT 956 ctttaaaatttcca 42170 42183 2-10-2 956_1 CTttaaaatttcCA 957 tctttaaaatttcc 42171 42184 2-10-2 957_1 TCtttaaaatttCC 958 ttctttaaaatttc 42172 42185 2-10-2 958_1 TTctttaaaattTC 959 tttctttaaaattt 42173 42186 2-10-2 959_1 TTtctttaaaatTT 960 atttctttaaaatt 42174 42187 2-10-2 960_1 ATttctttaaaaTT 961 catttctttaaaat 42175 42188 2-10-2 961_1 CAtttctttaaaAT 962 acatttctttaaaa 42176 42189 2-10-2 962_1 ACatttctttaaAA 963 cacatttctttaaa 42177 42190 2-10-2 963_1 CAcatttctttaAA 964 ccacatttctttaa 42178 42191 2-10-2 964_1 CCacatttctttAA 965 accacatttcttta 42179 42192 2-10-2 965_1 ACcacatttcttTA 966 aaccacatttcttt 42180 42193 2-10-2 966_1 AAccacatttctTT 967 aaaccacatttctt 42181 42194 2-10-2 967_1 AAaccacatttcTT 968 aaaaccacatttct 42182 42195 2-10-2 968_1 AAaaccacatttCT 969 caaaaccacatttc 42183 42196 2-10-2 969_1 CAaaaccacattTC 970 ttcttctcttttca 43831 43844 2-10-2 970_1 TTcttctcttttCA 971 tttcttctcttttc 43832 43845 2-10-2 971_1 TTtcttctctttTC 972 ttttcttctctttt 43833 43846 2-10-2 972_1 TTttcttctcttTT 973 tttttcttctcttt 43834 43847 2-10-2 973_1 TTtttcttctctTT 974 ttttttcttctctt 43835 43848 2-10-2 974_1 TTttttcttctcTT 975 attttttcttctct 43836 43849 2-10-2 975_1 AT11111cttctCT 976 tattttttcttctc 43837 43850 2-10-2 976_1 TAIIIIIIcttcTC 977 aacttaatattaaa 45488 45501 2-10-2 977_1 AActtaatattaAA 978 caacttaatattaa 45489 45502 2-10-2 978_1 CAacttaatattAA 979 tcaacttaatatta 45490 45503 2-10-2 979_1 TCaacttaatatTA 980 ttcaacttaatatt 45491 45504 2-10-2 980_1 TTcaacttaataTT 981 attcaacttaatat 45492 45505 2-10-2 981_1 ATtcaacttaatAT 982 tattcaacttaata 45493 45506 2-10-2 982_1 TAttcaacttaaTA 983 ttattcaacttaat 45494 45507 2-10-2 983_1 TTattcaacttaAT 984 tttattcaacttaa 45495 45508 2-10-2 984_1 TTtattcaacttAA 985 caaattaaaaaaca 47397 47410 2-10-2 985_1 CAaattaaaaaaCA 986 tcaaattaaaaaac 47398 47411 2-10-2 986_1 TCaaattaaaaaAC 987 ttcaaattaaaaaa 47399 47412 2-10-2 987_1 TTcaaattaaaaAA 988 cttcaaattaaaaa 47400 47413 2-10-2 988_1 CTtcaaattaaaAA 989 tcttcaaattaaaa 47401 47414 2-10-2 989_1 TCttcaaattaaAA 990 ttcttcaaattaaa 47402 47415 2-10-2 990_1 TTcttcaaattaAA 991 tttcttcaaattaa 47403 47416 2-10-2 991_1 TTtcttcaaattAA 992 aacacaaattcaaa 48077 48090 2-10-2 992_1 AAcacaaattcaAA 993 aaacacaaattcaa 48078 48091 2-10-2 993_1 AAacacaaattcAA 994 taaacacaaattca 48079 48092 2-10-2 994_1 TAaacacaaattCA 995 ataaacacaaattc 48080 48093 2-10-2 995_1 ATaaacacaaatTC 996 aataaacacaaatt 48081 48094 2-10-2 996_1 AAtaaacacaaaTT 997 caataaacacaaat 48082 48095 2-10-2 997_1 CAataaacacaaAT 998 acaataaacacaaa 48083 48096 2-10-2 998_1 ACaataaacacaAA 999 aacaataaacacaa 48084 48097 2-10-2 999_1 AAcaataaacacAA 1000 taacaataaacaca 48085 48098 2-10-2 1000_1 TAacaataaacaCA 1001 ttaacaataaacac 48086 48099 2-10-2 1001_1 TTaacaataaacAC 1002 attaacaataaaca 48087 48100 2-10-2 1002_1 ATtaacaataaaCA 1003 aattaacaataaac 48088 48101 2-10-2 1003_1 AAttaacaataaAC 1004 gaattaacaataaa 48089 48102 2-10-2 1004_1 GAattaacaataAA 1005 tgaattaacaataa 48090 48103 2-10-2 1005_1 TGaattaacaatAA 1006 atattcctcaatca 48905 48918 2-10-2 1006_1 ATattcctcaatCA 1007 tatattcctcaatc 48906 48919 2-10-2 1007_1 TAtattcctcaaTC 1008 atatattcctcaat 48907 48920 2-10-2 1008_1 ATatattcctcaAT 1009 aatatattcctcaa 48908 48921 2-10-2 1009_1 AAtatattcctcAA 1010 caatatattcctca 48909 48922 2-10-2 1010_1 CAatatattcctCA 1011 acaatatattcctc 48910 48923 2-10-2 1011_1 ACaatatattccTC 1012 gacaatatattcct 48911 48924 2-10-2 1012_1 GAcaatatattcCT 1013 caatcctaattaaa 48960 48973 2-10-2 1013_1 CAatcctaattaAA 1014 ccaatcctaattaa 48961 48974 2-10-2 1014_1 CCaatcctaattAA 1015 cccaatcctaatta 48962 48975 2-10-2 1015_1 CCcaatcctaatTA 1016 gcccaatcctaatt 48963 48976 2-10-2 1016_1 GCccaatcctaaTT 1017 tgcccaatcctaat 48964 48977 2-10-2 1017_1 TGcccaatcctaAT 1018 accctacaaatact 50093 50106 2-10-2 1018_1 ACcctacaaataCT 1019 aaccctacaaatac 50094 50107 2-10-2 1019_1 AAccctacaaatAC 1020 aaaccctacaaata 50095 50108 2-10-2 1020_1 AAaccctacaaaTA 1021 aaaaccctacaaat 50096 50109 2-10-2 1021_1 AAaaccctacaaAT 1022 aaaaaccctacaaa 50097 50110 2-10-2 1022_1 AAaaaccctacaAA 1023 aaaaaaccctacaa 50098 50111 2-10-2 1023_1 AAaaaaccctacAA 1024 aaaaaaaccctaca 50099 50112 2-10-2 1024_1 AAaaaaaccctaCA 1025 tatacactattaat 51008 51021 2-10-2 1025_1 TAtacactattaAT 1026 ttatacactattaa 51009 51022 2-10-2 1026_1 TTatacactattAA 1027 attatacactatta 51010 51023 2-10-2 1027_1 ATtatacactatTA 1028 aattatacactatt 51011 51024 2-10-2 1028_1 AAttatacactaTT 1029 gaattatacactat 51012 51025 2-10-2 1029_1 GAattatacactAT 1030 gtaacaattataca 51866 51879 2-10-2 1030_1 GTaacaattataCA 1031 tgtaacaattatac 51867 51880 2-10-2 1031_1 TGtaacaattatAC 1032 ctgtaacaattata 51868 51881 2-10-2 1032_1 CTgtaacaattaTA 1033 cctgtaacaattat 51869 51882 2-10-2 1033_1 CCtgtaacaattAT 1034 tcctgtaacaatta 51870 51883 2-10-2 1034_1 TCctgtaacaatTA 1035 ataaaaaccacctt 53263 53276 2-10-2 1035_1 ATaaaaaccaccTT 1036 aataaaaaccacct 53264 53277 2-10-2 1036_1 AAtaaaaaccacCT 1037 gaataaaaaccacc 53265 53278 2-10-2 1037_1 GAataaaaaccaCC 1038 agaataaaaaccac 53266 53279 2-10-2 1038_1 AGaataaaaaccAC 1039 cagaataaaaacca 53267 53280 2-10-2 1039_1 CAgaataaaaacCA 1040 ccagaataaaaacc 53268 53281 2-10-2 1040_1 CCagaataaaaaCC 1041 cccagaataaaaac 53269 53282 2-10-2 1041_1 CCcagaataaaaAC 1042 acccagaataaaaa 53270 53283 2-10-2 1042_1 ACccagaataaaAA 1043 tttcttactcccct 53699 53712 2-10-2 1043_1 TTtcttactcccCT 1044 ctttcttactcccc 53700 53713 2-10-2 1044_1 CTttcttactccCC 1045 actttcttactccc 53701 53714 2-10-2 1045_1 ACtttcttactcCC 1046 cactttcttactcc 53702 53715 2-10-2 1046_1 CActttcttactCC 1047 ccactttcttactc 53703 53716 2-10-2 1047_1 CCactttcttacTC 1048 cctttaccactttt 53948 53961 2-10-2 1048_1 CCtttaccacttTT 1049 ccctttaccacttt 53949 53962 2-10-2 1049_1 CCctttaccactTT 1050 tccctttaccactt 53950 53963 2-10-2 1050_1 TCcctttaccacTT 1051 atccctttaccact 53951 53964 2-10-2 1051_1 ATccctttaccaCT 1052 catccctttaccac 53952 53965 2-10-2 1052_1 CAtccctttaccAC 1053 ctacatctaacccc 54550 54563 2-10-2 1053_1 CTacatcttaccCC 1054 tctacatctaaccc 54551 54564 2-10-2 1054_1 TCtacatctaacCC 1055 gtctacatctaacc 54552 54565 2-10-2 1055_1 GTctacatctaaCC 1056 agtctacatctaac 54553 54566 2-10-2 1056_1 AGtctacatctaAC 1057 cagtctacatctaa 54554 54567 2-10-2 1057_1 CAgtctacatctAA 1058 tcagtctacatcta 54555 54568 2-10-2 1058_1 TCagtctacatcTA 1059 ttcagtctacatct 54556 54569 2-10-2 1059_1 TTcagtctacatCT 1060 taaccacacctcct 54573 54586 2-10-2 1060_1 TAaccacacctcCT 1061 ttaaccacacctcc 54574 54587 2-10-2 1061_1 TTaaccacacctCC 1062 tttaaccacacctc 54575 54588 2-10-2 1062_1 TTtaaccacaccTC 1063 ttttaaccacacct 54576 54589 2-10-2 1063_1 TTttaaccacacCT 1064 gttttaaccacacc 54577 54590 2-10-2 1064_1 GTtttaaccacaCC 1065 agttttaaccacac 54578 54591 2-10-2 1065_1 AGttttaaccacAC 1066 caacaaaacatcaa 55228 55241 2-10-2 1066_1 CAacaaaacatcAA 1067 tcaacaaaacatca 55229 55242 2-10-2 1067_1 TCaacaaaacatCA 1068 ttcaacaaaacatc 55230 55243 2-10-2 1068_1 TTcaacaaaacaTC 1069 tttcaacaaaacat 55231 55244 2-10-2 1069_1 TTtcaacaaaacAT 1070 ttttcaacaaaaca 55232 55245 2-10-2 1070_1 TTttcaacaaaaCA 1071 gttttcaacaaaac 55233 55246 2-10-2 1071_1 GTtttcaacaaaAC 1072 tgttttcaacaaaa 55234 55247 2-10-2 1072_1 TGttttcaacaaAA 1073 ttctaaaacttacc 55269 55282 2-10-2 1073_1 TTctaaaacttaCC 1074 tttctaaaacttac 55270 55283 2-10-2 1074_1 TTtctaaaacttAC 1075 ctttctaaaactta 55271 55284 2-10-2 1075_1 CTttctaaaactTA 1076 tctttctaaaactt 55272 55285 2-10-2 1076_1 TCtttctaaaacTT 1077 atctttctaaaact 55273 55286 2-10-2 1077_1 ATctttctaaaaCT 1078 aatctttctaaaac 55274 55287 2-10-2 1078_1 AAtctttctaaaAC 1079 gaatctttctaaaa 55275 55288 2-10-2 1079_1 GAatctttctaaAA 1080 agaatctttctaaa 55276 55289 2-10-2 1080_1 AGaatctttctaAA 1081 cagaatctttctaa 55277 55290 2-10-2 1081_1 CAgaatctttctAA 1082 cctttatttccctt 55494 55507 2-10-2 1082_1 CCtttatttcccTT 1083 ccctttatttccct 55495 55508 2-10-2 1083_1 CCctttatttccCT 1084 tccctttatttccc 55496 55509 2-10-2 1084_1 TCcctttatttcCC 1085 ttccctttatttcc 55497 55510 2-10-2 1085_1 TTccctttatttCC 1086 tttccctttatttc 55498 55511 2-10-2 1086_1 TTtccctttattTC 1087 atttccctttattt 55499 55512 2-10-2 1087_1 ATttccctttatTT 1088 tatttccctttatt 55500 55513 2-10-2 1088_1 TAtttccctttaTT 1089 gtatttccctttat 55501 55514 2-10-2 1089_1 GTatttccctttAT

Example 2: In Vitro Reduction of ATXN3 in SK—N-AS Human Cell Line Using Further LNA Gapmer Oligonucleotides Targeting ATNX3 Materials and Methods:

LNA modified oligonucleotides targeting human ATXN3 were tested for their ability to reduce ATXN3 mRNA expression in human SK—N-AS neuroblastoma cells acquired from ECACC Cat: 94092302. The cells were cultured according to the vendor guidelines in Dulbecco's Modified Eagle's Medium, supplemented with 0.1 mM Non-Essential Amino Acids (NEAA) and fetal bovine serum to a final concentration of 10%. Cells were cultured at 37° C., 5% CO₂ and 95% humidity in an active evaporation incubator (Thermo C10). Cells were seeded at a density of 9000 cells per well (96-well plate) in 190 ul of SK—N-AS cell culture medium. The cells were hereafter added 10 μl of oligo suspension or PBS (controls) to a final concentration of 5 μM from pre-made 96-well dilution plates. The cell culture plates were incubated for 72 hours in the incubator.

After incubation, cells were harvested by removal of media followed by cell lysis and RNA purification using QIAGEN RNeasy 96 Kit (cat 74181), following manufacturers protocol. RNA was diluted 2 fold in water prior to the one-step qPCR reaction. For one-step qPCR reaction qPCR-mix (qScript™ XLT One-Step RT-qPCR ToughMix® Low ROX from QuantaBio, cat. no 95134-500) and QPCR was run as duplex QPCR using assays from Integrated DNA technologies for ATXN3 (Hs.PT.58.39355049) and TBP (Hs.PT.58v.39858774)

Hs.PT.58.39355049-Primer Sequences Probe: (SEQ ID NO: 1130) 5′-/56-FAM/AAAGGCCAG/ZEN/CCACCAGTTCAGG/3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1129) 5′-CTATCAGGACAGAGTTCACATCC-3′ Primer 2: (SEQ ID NO: 1128) 5′-GTTTCTAAAGACATGGTCACAGC-3′ Hs.PT.58v.39858774-Primer Sequences Probe: (SEQ ID NO: 1131) 5′-/5HEX/TGA TCT TTG/ZEN/CAG TGA CCC AGC ATC A/ 3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1132) 5′-GCT GTT TAA CTT CGC TTC CG-3′  Primer 2: (SEQ ID NO: 1133) 5′-CAG CAA CTT CCT CAA TTC CTT G-3′

The reactions were then mixed in a qPCR plate (MICROAMP® optical 384 well, 4309849). After sealing, the plate was given a quick spin, 1000 g for 1 minute at RT, and transferred to a Viia™ 7 system (Applied Biosystems, Thermo), and the following PCR conditions used: 50° C. for 15 minutes; 95° C. for 3 minutes; 40 cycles of: 95° C. for 5 sec followed by a temperature decrease of 1.6° C./sec followed by 60° C. for 45 sec. The data was analyzed using the QuantStudio™ Real_time PCR Software and quantity calculated by the delta delta Ct method (Quantity=2{circumflex over ( )}(−Ct)*1000000000). Quantity is normalized to the calculated quantity for the housekeeping gene assay (TBP) run in the same well. Relative Target Quantity=QUANTITY_target/QUANTITY_housekeeping (RNA knockdown) was calculated for each well by division with the mean of all PBS-treated wells on the same plate. Normalised Target Quantity=(Relative Target Quantity/[mean] Relative Target Quantity]_pbs_wells)*100.

Compounds targeting selected target sequence regions of SEQ ID NO:1 were evaluated in the above assay.

Results:

The target knock-down data is presented in the following Compound and Data Table: In the Compound table, motif sequences represent the contiguous sequence of nucleobases present in the oligonucleotide.

Oligonucleotide compound represent specific designs of a motif sequence. Capital letters represent beta-D-oxy LNA nucleosides, lowercase letters represent DNA nucleosides, all LNA C are 5-methyl cytosine, all internucleoside linkages are phosphorothioate internucleoside linkages.

TABLE 4 Compound and Data Table % of ATXN3 SEQ CMP Oligonucleotide Oligonucleotide mRNA ID ID Base Sequence compound remaining 1099 1099_1 CCAAAAGAAACCAAACCC CCAAaagaaaccaaacCC 90.6 1100 1100_1 CCCCATTCAAATATTTATT CCccattcaaatatttATT 90.5 1101 1101_1 AATCATTTACCCCCAAC AAtcatttaccccCAAC 92 1102 1102_1 TATCTCAAACTATCCCCA TAtctcaaactatcccCA 93 1103 1103_1 TCTATTCCTTAACCCAAC TCTattccttaacccAAC 76.6 1104 1104_1 TCCCCTAAATAATTTAATCA TCccctaaataatttaATCA 79.3 1105 1105 1 AAACCACTCCATTCCAA AaaccactccattCCAA 57.7 1106 1106_1 TCTAAACCCCAAACTTTCA TCtaaaccccaaactttCA 74.3 1107 1107_1 TTCTAAACCCCAAACTTTC TTCtaaaccccaaacttTC 61.8 1108 1108_1 AGTTCTAAACCCCAAACT AGttctaaaccccaaACT 73.7 1109 1109_1 TGAAACCATTACTACAACC TGaaaccattactacAACC 24.9 1110 1110_1 ACATCATTTATCACTACCAC ACAtcatttatcactaccAC 71.9 1111 1111_1 AACATTAAACCCTCCCA AacattaaaccctcCCA 80.2 1112 1112_1 TCAGATCCTAAAATCACT TCAgatcctaaaatcACT 79.5 1113 1113_1 CTATACCTAAAACAATCTA CTAtacctaaaacaatCTA 99.1 1114 1114_1 TGATTCTTATACTTACTA TGAttcttatacttaCTA 72.1 1115 1115 1 TAAAAATATAACTACTCCT TAaaaatataactactCCTA 93.7 A 1116 1116_1 TCTTCATTATACCATCAAAT TCTtcattataccatcaAAT 51.5 1117 1117_1 GTTTCATATTTTTAATCC GTTtcatatttttaaTCC 37.7 1118 1118_1 TAATATCCTCATTACCCATT TAatatcctcattacccaTT 84 1119 1119_1 CAAATATTCACAAATCCTA CAaatattcacaaatCCTA 73.3 1120 1120_1 CATCACAAAATAACCTATC CATcacaaaataacctaTC 79.9 A A 1121 1121_1 CTCTCAACTTCTACTACTAA CTCtcaacttctactactAA 59.6 1122 1122_1 AATCTTATTTACATCTTCC AATcttatttacatctTCC 20.7 1123 1123_1 CCAAAATTACTTCTTTTATC CCAaaattacttcttttATC 56.5 1124 1124_1 AACCCAACTTTCTATTTT AACCcaactttctattTT 52.7 1125 1125_1 ACAATATATTCCTCAATCA ACAatatattcctcaaTCA 86.8 1126 1126_1 CCTGTAACAATTATACA CCTgtaacaattatACA 92.3 1127 1127_1 CATCCCTTTACCACTTT CAtccctttaccactTT 94.5

In the oligonucleotide compound column, capital letters represent beta-D-oxy LNA nucleosides, LNA cytosines are 5-methyl cytosine, lower case letters are DNA nucleosides, and all internucleoside linkages are phosphorothioate.

As can be seen, most of the above compounds targeting the listed target sequence regions are capable of inhibiting the expression of the human ataxin 3 transcript and that compounds targeting the target sequence region complementary to SEQ ID NOS:1122 and 1109 are particularly effective in inhibiting the human ataxin 3 transcript. Other effective target sites for ATXN3 can be determined from the above table.

Example 3 Materials and Methods:

The screening assay described in Example 2 was performed using a series of further oligonucleotide targeting human ATXN3 pre-mRNA using the qpCR: (ATXN3_exon_8-9(1) PrimeTime® XL qPCR Assay (IDT).

qPCR probe and primers set 2: Probe: (SEQ ID NO: 1134) 5′-/56-FAM/CTCCGCAGG/ZEN/GCT ATTCAGCT AAGT/ 3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1135) 5′-AGT AAGATTTGT ACCTGATGTCTGT-3′ Primer 2: (SEQ ID NO: 1136) 5′-CATGGAAGATGAGGAAGCAGAT-3′

Results:

The results are shown in the following table:

TABLE 5 % of ATXN3 SEQ CMP Oligonucleotide Oligonucleotide mRNA ID ID Base Sequence compound remaining 1137 1137_1 CCTACTTCACTTCCTAA CctacttcacttcCTAA 68.9 1138 1138_1 TTTCCTACTTCACTTCCTA TttcctacttcacttccTA 95.1 1139 1139_1 TTCCTACTTCACTTCCTA TtcctacttcacttcCTA 85 1140 1140_1 TTTCCTACTTCACTTCCT TTtcctacttcacttcCT 88.1 1141 1141_1 TTTCCTACTTCACTTCC TttcctacttcactTCC 83.1 1142 1142_1 GTTTCCTACTTCACTTC GTTtcctacttcactTC 60.2 1143 1143_1 ACCAAACCCAAACATCCC AccaaacccaaacatcCC 88 1144 1144_1 AGAAACCAAACCCAAACATC AgaaaccaaacccaaaCATC 91.3 1145 1145_1 AGAAACCAAACCCAAACAT AGaaaccaaacccaaACAT 93.5 1146 1146_1 CTCCTAATACCTAAAAACAA CTCCtaatacctaaaaacaAA 100 A 1147 1147_1 CTCCTAATACCTAAAAACA CTCCtaatacctaaaaaCA 94.2 1148 1148_1 ACTCCTAATACCTAAAAACA ACTCctaatacctaaaaaCA 81 1149 1149_1 CACTCCTAATACCTAAAAAC CACtcctaatacctaaaaACA 90.4 A 1150 1150_1 CCACTCCTAATACCTAAAAA CCACtcctaatacctaaaAA 63 1151 1151_1 TCCACTCCTAATACCTAAAAA TCCactcctaatacctaaaAA 54 1152 1152_1 CCACTCCTAATACCTAAAA CCACtcctaatacctaaAA 73.7 1153 1153_1 TCCACTCCTAATACCTAAAA TCCactcctaatacctaAAA 59 1154 1154_1 CCACTCCTAATACCTAAA CCACtcctaatacctaAA 65.2 1155 1155_1 GTCCACTCCTAATACCTAAA GtccactcctaataccTAAA 86.8 1156 1156_1 CCACTCCTAATACCTAA CCactcctaatacCTAA 52.3 1157 1157_1 TCCACTCCTAATACCTAA TCcactcctaatacCTAA 64.3 1157 1157_2 TCCACTCCTAATACCTAA TCCActcctaatacctAA 66 1158 1158_1 GTCCACTCCTAATACCTAA GtccactcctaataccTAA 85.5 1159 1159_1 AGTCCACTCCTAATACCTA AgtccactcctaataccTA 87.4 1160 1160_1 TCCACTCCTAATACCTA TCcactcctaatacCTA 70.1 1161 1161_1 AGTCCACTCCTAATACCT AgtccactcctaatacCT 84.2 1162 1162_1 GTCCACTCCTAATACC GTCcactcctaataCC 57.8 1163 1163_1 AGTCCACTCCTAATACC AGtccactcctaataCC 77.1 1164 1164_1 CAGTCCACTCCTAATACC CagtccactcctaatACC 86.7 1162 1162_2 GTCCACTCCTAATACC GTCcactcctaatACC 67.8 1165 1165_1 CCAGTCCACTCCTAATAC CcagtccactcctaaTAC 85.4 1166 1166_1 CAGTCCACTCCTAATAC CAgtccactcctaaTAC 60.7 1167 1167_1 AGTCCACTCCTAATAC AGTCcactcctaatAC 78.9 1168 1168_1 CAGTCCACTCCTAATA CAGtccactcctaaTA 44.5 1169 1169_1 CCAGTCCACTCCTAATA CCagtccactcctaaTA 33.8 1170 1170_1 GCAACTCTTTCCAAACA GCAActctttccaaaCA 36 1171 1171_1 AGCAACTCTTTCCAAACA AGCaactctttccaaaCA 35.3 1172 1172_1 CAGCAACTCTTTCCAAACA CAgcaactctttccaaACA 58.3 1173 1173_1 CCAGCAACTCTTTCCAAA CcagcaactctttcCAAA 69.7 1174 1174_1 CCAGCAACTCTTTCCAA CCagcaactctttcCAA 42.1 1175 1175_1 ACCAGCAACTCTTTCCAA ACcagcaactctttcCAA 65 1176 1176_1 TTACCAGCAACTCTTTC TTACcagcaactcttTC 53 1177 1177_1 TGCTCCTCCTATTAAATAA TGCtcctcctattaaatAA 76.3 1178 1178_1 GCTCCTCCTATTAAATAA GCtcctcctattaaATAA 61.8 1179 1179_1 GCTCCTCCTATTAAATA GCtcctcctattaaATA 60.2 1180 1180_1 TGCTCCTCCTATTAAATA TGctcctcctattaaATA 70.2 1181 1181_1 TGCTCCTCCTATTAAAT TGCtcctcctattaaAT 80.2 1182 1182_1 TTGCTCCTCCTATTAAAT TTGCtcctcctattaaAT 79 1183 1183_1 ATTTAATAAAACAAAAACCC ATttaataaaacaaaaaCCCT 97.2 T 1184 1184_1 GCCCAAAAAACTAAATT GCCCaaaaaactaaaTT 95.5 1185 1185_1 GTTTTTACATTCTAACTT GTTtttacattctaaCTT 54.1 1186 1186_1 TGTTTTTACATTCTAACT TGTTtttacattctaaCT 63.8 1187 1187_1 CTGTTTTTACATTCTAAC CTGTttttacattctaAC 62.5 1188 1188_1 CCCCATTCAAATATTTAT CCCcattcaaatattTAT 64.9 1189 1189_1 GCCCCATTCAAATATTTAT GCcccattcaaatattTAT 86.2 1188 1188_2 CCCCATTCAAATATTTAT CCCCattcaaatatttAT 96.2 1190 1190_1 GCCCCATTCAAATATTTA GCcccattcaaatatTTA 82.2 1191 1191_1 CCATTCAAATATATACATTTT CCATtcaaatatatacattTT 72 1191 1191_2 CCATTCAAATATATACATTTT CCATtcaaataTatacattTT 37.7 1192 1192_1 TCCATTCAAATATATACATTT TCCAttcaaatatatacatTT 56.8 1193 1193_1 ATCCATTCAAATATATACATT ATCCattcaaaTatatacaTT 48 1194 1194_1 TCCATTCAAATATATACATT TCCAttcaaatatatacaTT 53.7 1193 1193_2 ATCCATTCAAATATATACATT ATCCattcaaatatatacaTT 54.7 1195 1195_1 TATCCATTCAAATATATACAT TATccattcaaatatataCAT 80.1 1196 1196_1 TCCATTCAAATATATACAT TCCattcaaatatataCAT 43.1 1197 1197_1 ATCCATTCAAATATATACA ATCCattcaaatatataCA 53.9 1198 1198_1 TTATCCATTCAAATATATACA TTatccattcaaatataTACA 69.4 1199 1199_1 TCCATTCAAATATATACA TCCAttcaaatatataCA 54.7 1200 1200_1 TATCCATTCAAATATATACA TATCcattcaaatatataCA 53.3 1201 1201_1 CTTTATCCATTCAAATATATA CTttatccattcaaataTATA 85.5 1202 1202_1 TCTTTATCCATTCAAATATAT TCTttatccattcaaataTAT 62.6 1203 1203_1 CTCTTTATCCATTCAAATATA CTCtttatccattcaaatATA 38.4 1204 1204_1 TCTTTATCCATTCAAATATA TCtttatccattcaaaTATA 70.9 1203 1203_2 CTCTTTATCCATTCAAATATA CTCTttatccattcaaataTA 33.6 1205 1205_1 CTTTATCCATTCAAATATA CTttatccattcaaaTATA 78.4 1206 1206_1 TCTCTTTATCCATTCAAATAT TCtctttatccattcaaaTAT 82 1207 1207_1 CTCTTTATCCATTCAAATAT CTCtttatccattcaaaTAT 39.8 1208 1208_1 TCTTTATCCATTCAAATAT TCTttatccattcaaaTAT 63.1 1209 1209_1 TCTCTTTATCCATTCAAATA TCtctttatccattcaAATA 65.2 1210 1210_1 CTCTTTATCCATTCAAATA CTCTttatccattcaaaTA 32.2 1211 1211_1 TCTCTTTATCCATTCAAAT TCTCtttatccattcaaAT 42 1212 1212_1 TCTCTTTATCCATTCAAA TCTCtttatccattcaAA 42.5 1213 1213_1 AGCACCATATATATCTCA AgcaccatatatatCTCA 16 1214 1214_1 GCACCATATATATCTCA GCaccatatatatcTCA 16 1215 1215_1 CAGCACCATATATATCTCA CagcaccatatatatCTCA 19.2 1215 1215_2 CAGCACCATATATATCTCA CAgcaccatatatatcTCA 24.1 1216 1216_1 AGCACCATATATATCTC AGCaccatatatatcTC 19.9 1217 1217_1 GCACCATATATATCTC GCACcatatatatcTC 82.7 1218 1218_1 CAGCACCATATATATCTC CAgcaccatatatatCTC 21.1 1219 1219_1 CAGCACCATATATATCT CAGcaccatatataTCT 28.9 1220 1220_1 ACAGCACCATATATATCT ACAGcaccatatatatCT 21.9 1221 1221_1 ACAGCACCATATATATC ACAGcaccatatataTC 25.4 1222 1222_1 CTATGTTATTATCCCCA CTAtgttattatcccCA 56.1 1223 1223_1 TCTATGTTATTATCCCC TctatgttattatcCCC 47.7 1224 1224_1 CTCTACACTCTAACTCT CtctacactctaaCTCT 79.3 1225 1225_1 TCTCTACACTCTAACTCT TctctacactctaaCTCT 79.6 1226 1226_1 TTCTCTACACTCTAACTCT TTCtctacactctaactCT 86.9 1227 1227_1 CTTCTCTACACTCTAACTCT CTtctctacactctaactCT 97 1227 1227_2 CTTCTCTACACTCTAACTCT CttctctacactctaacTCT 84.5 1228 1228_1 TTCTCTACACTCTAACTC TTCtctacactctaacTC 81.4 1229 1229_1 CTTCTCTACACTCTAACTC CttctctacactctaaCTC 89.1 1230 1230_1 TCTCTACACTCTAACTC TCtctacactctaaCTC 87.3 1231 1231_1 CCTTCTCTACACTCTAACTC CcttctctacactctaacTC 98.3 1232 1232_1 TTCTCTACACTCTAACT TTCTctacactctaaCT 80.1 1233 1233_1 CTTCTCTACACTCTAACT CTTctctacactctaaCT 73.6 1234 1234_1 CCTTCTCTACACTCTAACT CcttctctacactctAACT 77.7 1235 1235_1 CCTTCTCTACACTCTAAC CCTtctctacactctaAC 82.4 1236 1236_1 CTTCTCTACACTCTAAC CTtctctacactcTAAC 90.6 1237 1237_1 AGCCTTCTCTACACTCTAA AgccttctctacactcTAA 80 1238 1238_1 CCTTCTCTACACTCTAA CCttctctacactcTAA 72.2 1239 1239_1 GCCTTCTCTACACTCTAA GCcttctctacactctAA 62.9 1240 1240_1 AGCCTTCTCTACACTCTA AgccttctctacactcTA 85.2 1241 1241_1 TACTAACTACAACACAAATC TACtaactacaacacaaaTCA 91.3 A 1241 1241_2 TACTAACTACAACACAAATC TACtaactacAacacaaaTC 81.1 A A 1242 1242_1 CTACTAACTACAACACAAAT CTACtaactacaacacaaaTC 108 C 1243 1243_1 CACTACTAACTACAACACAA CACTactaactacaacacaA 74 A A 1244 1244_1 CACTACTAACTACAACACAA CACtactaactacaacaCAA 87.4 1245 1245_1 ACACTACTAACTACAACACA ACActactaactacaacaCA 84.1 A A 1246 1246_1 CACTACTAACTACAACACA CACTactaactacaacaCA 83.5 1247 1247_1 ACACTACTAACTACAACACA ACACtactaactacaacaCA 81.3 1248 1248_1 GACACTACTAACTACAACAC GACactactaactacaaCAC 51.6 1249 1249_1 GACACTACTAACTACAACA GACActactaactacaaCA 51 1250 1250_1 AGACACTACTAACTACAA AGAcactactaactaCAA 57.2 1251 1251_1 AGACACTACTAACTACA AGACactactaactaCA 34.7 1252 1252_1 ATCATTTACCCCCAACCT AtcatttacccccaacCT 96 1253 1253_1 ATCATTTACCCCCAACC AtcatttacccccAACC 89.1 1254 1254_1 CAAATCATTTACCCCCAA CaaatcatttacccCCAA 92 1255 1255_1 CCAAATCATTTACCCCCAA CcaaatcatttaccccCAA 91 1256 1256_1 ACCAAATCATTTACCCCCA AccaaatcatttaccccCA 89.9 1257 1257_1 TACCAAATCATTTACCCCC TaccaaatcatttacccCC 84 1258 1258_1 ACCAAATCATTTACCCC ACcaaatcatttacCCC 69.9 1259 1259_1 TACCAAATCATTTACCCC TACcaaatcatttaccCC 56.3 1260 1260_1 CTACCAAATCATTTACCCC CtaccaaatcatttaccCC 94 1261 1261_1 TACCAAATCATTTACCC TAccaaatcatttACCC 68.9 1262 1262_1 CTACCAAATCATTTACC CTACcaaatcatttaCC 70.3 1263 1263_1 TGCTACCAAATCATTTACC TgctaccaaatcattTACC 79 1264 1264_1 GCTACCAAATCATTTACC GCtaccaaatcatttACC 83.6 1265 1265_1 TGCTACCAAATCATTTAC TGCTaccaaatcatttAC 88.3 1266 1266_1 GCTACCAAATCATTTAC GCTaccaaatcattTAC 71.4 1267 1267_1 TGCTACCAAATCATTTA TGCtaccaaatcatTTA 79.8 1268 1268_1 CTGCTACCAAATCATTTA CTGctaccaaatcatTTA 75.3 1269 1269_1 ACTGCTACCAAATCATTT ACTGctaccaaatcatTT 83.4 1270 1270_1 CTGCTACCAAATCATTT CTGCtaccaaatcatTT 83 1271 1271_1 ACTGCTACCAAATCATT ACTGctaccaaatcaTT 71.1 1272 1272_1 CACTTTGCCATAATCAA CActttgccataaTCAA 26 1273 1273_1 TTATCTCAAACTATCCCCA TTAtctcaaactatcccCA 92.9 1274 1274_1 ATCTCAAACTATCCCCA ATctcaaactatccCCA 72.3 1275 1275_1 CTTATCTCAAACTATCCCCA CttatctcaaactatcccCA 85.5 1276 1276_1 TATCTCAAACTATCCCC TatctcaaactatcCCC 79.8 1277 1277_1 CTTATCTCAAACTATCCCC CTtatctcaaactatccCC 84 1278 1278_1 TTATCTCAAACTATCCCC TTAtctcaaactatccCC 89.7 1279 1279_1 CTTATCTCAAACTATCCC CttatctcaaactaTCCC 83.5 1280 1280_1 CCTTATCTCAAACTATCCC CcttatctcaaactatcCC 87.6 1279 1279_2 CTTATCTCAAACTATCCC CTtatctcaaactatCCC 76.9 1281 1281_1 TTATCTCAAACTATCCC TtatctcaaactaTCCC 84.7 1282 1282_1 CTTATCTCAAACTATCC CTTatctcaaactaTCC 78.3 1283 1283_1 CCCTTATCTCAAACTATCC CccttatctcaaactaTCC 76.4 1284 1284_1 CCTTATCTCAAACTATCC CCTtatctcaaactatCC 69.3 1285 1285_1 CCTTATCTCAAACTATC CCttatctcaaacTATC 75.9 1286 1286_1 GCCCTTATCTCAAACTATC GCccttatctcaaactaTC 76.6 1287 1287_1 CCCTTATCTCAAACTATC CCcttatctcaaacTATC 67.2 1288 1288_1 TGCCCTTATCTCAAACTAT TgcccttatctcaaacTAT 90.5 1289 1289_1 GCCCTTATCTCAAACTAT GCccttatctcaaacTAT 71.9 1290 1290_1 CCCTTATCTCAAACTAT CCCTtatctcaaactAT 77.7 1291 1291_1 GCCCTTATCTCAAACTA GCccttatctcaaacTA 68.4 1292 1292_1 TGCCCTTATCTCAAACTA TgcccttatctcaaaCTA 81.5 1293 1293_1 TGCCCTTATCTCAAACT TGcccttatctcaaaCT 75.7 1294 1294_1 TTGCCCTTATCTCAAAC TTGCccttatctcaaAC 89 1295 1295_1 CTTGCCCTTATCTCAA CTtgcccttatcTCAA 48.2 1296 1296_1 TGAAATCAAACTTCATCA TGAaatcaaacttcaTCA 66.5 1297 1297_1 GGTCACCATACTTAAT GGTCaccatacttaAT 89.7 1298 1298_1 TGCTAACACAAATTTCCT TGctaacacaaattTCCT 47.3 1299 1299_1 GCTAACACAAATTTCCT GCTaacacaaatttCCT 48.9 1299 1299_2 GCTAACACAAATTTCCT GCtaacacaaattTCCT 45.7 1300 1300_1 TTGCTAACACAAATTTCC TTGCtaacacaaatttCC 60.7 1301 1301_1 TGCTAACACAAATTTCC TGCTaacacaaatttCC 62.6 1302 1302_1 TTGCTAACACAAATTTC TTGCtaacacaaattTC 72.4 1303 1303_1 CCTTTGCTAACACAAAT CCTTtgctaacacaaAT 48.1 1304 1304_1 GTATAACCAATAATAACTA GTAtaaccaataataaCTA 86.1 1305 1305_1 TCTGACATCACACAATTT TCTGacatcacacaatTT 67.8 1306 1306_1 TCTGACATCACACAATT TCTGacatcacacaaTT 70.2 1307 1307_1 TATCTGACATCACACAA TATctgacatcacaCAA 69.8 1308 1308_1 CTATTCCTTAACCCAAC CTattccttaaccCAAC 77.7 1309 1309_1 GTCTATTCCTTAACCCAAC GtctattccttaaccCAAC 86.2 1310 1310_1 GTCTATTCCTTAACCCAA GtctattccttaacCCAA 60.4 1311 1311_1 TCTATTCCTTAACCCAA TCTattccttaaccCAA 51 1312 1312_1 GTCTATTCCTTAACCCA GtctattccttaacCCA 67.3 1313 1313_1 GTCTATTCCTTAACCC GtctattccttaaCCC 77.4 1314 1314_1 GGTCTATTCCTTAACC GGtctattccttaaCC 83.2 1315 1315_1 AGAACATTTCCTTCTCCT AgaacatttccttctcCT 84.2 1316 1316_1 AACTGTCCCAAACAACC AACtgtcccaaacaaCC 75 1317 1317_1 TTAGTCTCCCTCATTTTC TtagtctccctcattTTC 72.4 1318 1318_1 ATTTAGTCTCCCTCATT ATttagtctccctCATT 48 1319 1319_1 ATGCATCAAATCTCATA ATGCatcaaatctcaTA 83.7 1320 1320_1 CCTAAATAATTTAATCATTAA CCTaaataatttaatcatTAA 94 1321 1321_1 CCCTAAATAATTTAATCATTA CCCTaaataatttaatcatTA 88.8 1322 1322_1 CCCCTAAATAATTTAATCATT CCCctaaataatttaatcATT 80.7 1323 1323_1 CCCTAAATAATTTAATCATT CCCTaaataatttaatcaTT 82.2 1324 1324_1 CCCTAAATAATTTAATCAT CCCtaaataatttaatCAT 87.1 1325 1325_1 CCCCTAAATAATTTAATCA CCCctaaataatttaaTCA 79.9 1326 1326_1 CCCTAAATAATTTAATCA CCCtaaataatttaaTCA 82.5 1327 1327_1 CCCCTAAATAATTTAATC CCCCtaaataatttaaTC 116 1328 1328_1 TCCCCTAAATAATTTAATC TCCCctaaataatttaaTC 109 1329 1329_1 TTGCTAATATTTCCAAAA TTGCtaatatttccaaAA 84.2 1330 1330_1 CTTGCTAATATTTCCAA CTtgctaatatttCCAA 66.1 1331 1331_1 ACTGTCATCCATATTTCC ActgtcatccatattTCC 66.2 1332 1332_1 ACTGTCATCCATATTTC ACTgtcatccatatTTC 48.1 1333 1333_1 AATGCCCCACTCTAATAT AATGccccactctaatAT 36.9 1334 1334_1 TGCCCCACTCTAATAT TGCcccactctaatAT 52.8 1335 1335_1 ATGCCCCACTCTAATAT ATgccccactctaaTAT 43.7 1336 1336_1 AAATGCCCCACTCTAATA AAATgccccactctaaTA 25.7 1337 1337_1 ATGCCCCACTCTAATA ATGccccactctaaTA 28.6 1338 1338_1 AATGCCCCACTCTAATA AATGccccactctaaTA 29.9 1339 1339_1 TTAAATGCCCCACTCTA TtaaatgccccactCTA 51.3 1340 1340_1 TCTGAAAATTCACTATCT TCTGaaaattcactatCT 35.7 1341 1341_1 GTCTACTATATACATCT GTCtactatatacaTCT 30.6 1342 1342_1 AGTCTACTATATACATCT AGTCtactatatacatCT 45.3 1343 1343_1 AGTCTACTATATACATC AGTCtactatatacaTC 57 1344 1344_1 GTCTACTATATACATC GTCTactatatacaTC 46.5 1345 1345_1 TAGTCTACTATATACATC TAgtctactatataCATC 68.3 1346 1346_1 TAGTCTACTATATACAT TAGtctactatataCAT 89 1347 1347_1 CTAGTCTACTATATACAT CTAgtctactatataCAT 86.6 1348 1348_1 CTAGTCTACTATATACA CTAGtctactatataCA 88.5 1349 1349_1 ACTAGTCTACTATATAC ACTagtctactataTAC 85.1 1350 1350_1 CTAGTCTACTATATAC CTAgtctactataTAC 85.3 1351 1351_1 GTATATTCTACCCATAA GTAtattctacccaTAA 51.3 1352 1352_1 TGTATATTCTACCCATAA TGTatattctacccaTAA 48.4 1353 1353_1 TGTATATTCTACCCATA TGtatattctaccCATA 45.6 1354 1354_1 ATGTATATTCTACCCATA ATgtatattctaccCATA 90.2 1355 1355_1 ATGTATATTCTACCCAT ATgtatattctacCCAT 51.1 1356 1356_1 GAAAACCACACAATTCCTA GaaaaccacacaattCCTA 58.9 1357 1357_1 GAAAACCACACAATTCCT GAaaaccacacaatTCCT 56.4 1358 1358_1 AGAAAACCACACAATTCCT AGaaaaccacacaattCCT 58.4 1359 1359_1 CAGAAAACCACACAATTCC CAGaaaaccacacaatTCC 43.3 1360 1360_1 AGAAAACCACACAATTCC AGAaaaccacacaatTCC 47.6 1361 1361_1 CCAGAAAACCACACAATTC CCAGaaaaccacacaatTC 26.3 1362 1362_1 CCAGAAAACCACACAATT CCAGaaaaccacacaaTT 21 1363 1363_1 TCCAGAAAACCACACAAT TCCAgaaaaccacacaAT 47.1 1364 1364_1 TTCCAGAAAACCACACAA TTCCagaaaaccacacAA 49.8 1364 1364_2 TTCCAGAAAACCACACAA TTCcagaaaaccacaCAA 45.8 1365 1365_1 GATATATCACTAAATCCAT GAtatatcactaaatCCAT 27.4 1366 1366_1 GATATATCACTAAATCCA GAtatatcactaaaTCCA 43.7 1367 1367_1 AGATATATCACTAAATCCA AGatatatcactaaaTCCA 37.4 1368 1368_1 AGATATATCACTAAATCC AGAtatatcactaaaTCC 33.6 1369 1369_1 TCATATATAAATTTCTCTA TCAtatataaatttctCTA 78 1369 1369_2 TCATATATAAATTTCTCTA TCATatataaatttctcTA 73.1 1370 1370_1 TCATATATAAATTTCTCT TCatatataaatttCTCT 27.9 1370 1370_2 TCATATATAAATTTCTCT TCATatataaatttctCT 60.2 1371 1371_1 AAGATCACACAACCATA AAGAtcacacaaccaTA 19.8 1372 1372_1 TAAAAGATCACACAACCA TAaaagatcacacaACCA 47.5 1373 1373_1 CATCACATAAAAACCCACTT CATcacataaaaacccaCTT 45.4 1374 1374_1 CATCACATAAAAACCCACT CAtcacataaaaaccCACT 57.9 1375 1375_1 TCATCACATAAAAACCCACT TCatcacataaaaaccCACT 30.1 1376 1376_1 CATCACATAAAAACCCAC CAtcacataaaaacCCAC 61.6 1377 1377_1 TCATCACATAAAAACCCAC TCatcacataaaaacCCAC 30.6 1378 1378_1 GTCATCACATAAAAACCCAC GTCatcacataaaaaccCAC 24.9 1379 1379_1 GTCATCACATAAAAACCCA GTCatcacataaaaacCCA 28.7 1380 1380_1 TCATCACATAAAAACCCA TCatcacataaaaaCCCA 43.9 1381 1381_1 CATCACATAAAAACCCA CAtcacataaaaaCCCA 71.5 1382 1382_1 TCATCACATAAAAACCC TCAtcacataaaaaCCC 42.9 1383 1383_1 GTCATCACATAAAAACCC GTCatcacataaaaaCCC 24.9 1384 1384_1 AGTCATCACATAAAAACCC AGtcatcacataaaaACCC 35.8 1384 1384_2 AGTCATCACATAAAAACCC AGTCatcacataaaaacCC 23 1385 1385_1 TAGTCATCACATAAAAACC TAGTcatcacataaaaaCC 36.3 1386 1386_1 AGTCATCACATAAAAACC AGTCatcacataaaaaCC 34.9 1387 1387_1 ATGCTAAATACAAATCT ATGCtaaatacaaatCT 81 1388 1388_1 GAAACCATTACTACAACCAA GAaaccattactacaaCCAA 20.1 1389 1389_1 GAAACCATTACTACAACCA GAaaccattactacaACCA 15.9 1390 1390_1 ATGAAACCATTACTACAAC ATGAaaccattactacaAC 45.6 1391 1391_1 CATGAAACCATTACTACA CATGaaaccattactaCA 55.9 1392 1392_1 CCATGAAACCATTACTAC CCatgaaaccattaCTAC 29.5 1393 1393_1 CTCCCATGAAACCATTA CTCCcatgaaaccatTA 73.7 1394 1394_1 TGCTTACTTTATACAAAA TGCTtactttatacaaAA 55.9 1395 1395_1 ATGTTAATACTTTTTCCA ATGttaatactttttCCA 92.9 1396 1396_1 CCTAATTTAACCCACAA CCTaatttaacccaCAA 32.2 1397 1397_1 ATCCTAATTTAACCCACAA ATCctaatttaacccaCAA 38.1 1398 1398_1 TCCTAATTTAACCCACAA TCCtaatttaacccaCAA 39.9 1399 1399_1 TAATCCTAATTTAACCCACAA TAAtcctaatttaacccaCAA 72.8 1400 1400_1 TAATCCTAATTTAACCCACA TAatcctaatttaaccCACA 45 1401 1401_1 AATCCTAATTTAACCCACA AATCctaatttaacccaCA 41.2 1402 1402_1 TCCTAATTTAACCCACA TCCtaatttaacccACA 38.3 1403 1403_1 TAATCCTAATTTAACCCAC TAatcctaatttaacCCAC 37.5 1404 1404_1 ATCCTAATTTAACCCAC ATcctaatttaacCCAC 34.4 1405 1405_1 AATCCTAATTTAACCCAC AAtcctaatttaacCCAC 48.2 1406 1406_1 TAATCCTAATTTAACCCA TAatcctaatttaaCCCA 56.5 1407 1407_1 AATCCTAATTTAACCCA AAtcctaatttaaCCCA 71.7 1408 1408_1 GTAATCCTAATTTAACCCA GtaatcctaatttaaCCCA 63.6 1409 1409_1 TAATCCTAATTTAACCC TAatcctaatttaACCC 56.5 1410 1410_1 GTAATCCTAATTTAACCC GTaatcctaatttaACCC 44 1411 1411_1 AGTAATCCTAATTTAACCC AGtaatcctaatttaaCCC 66.2 1410 1410_2 GTAATCCTAATTTAACCC GTAatcctaatttaaCCC 34.2 1412 1412_1 AGTAATCCTAATTTAACC AGTAatcctaatttaaCC 42.7 1413 1413_1 TCATTTATCACTACCACA TCAtttatcactaccACA 26.5 1414 1414_1 CATCATTTATCACTACCACA CatcatttatcactacCACA 46 1415 1415_1 CATTTATCACTACCACA CAtttatcactacCACA 19.4 1416 1416_1 ATCATTTATCACTACCACA ATcatttatcactacCACA 16.8 1416 1416_2 ATCATTTATCACTACCACA ATCAtttatcactaccaCA 14.1 1417 1417_1 ACATCATTTATCACTACCACA ACatcatttatcactaccACA 53.4 1418 1418_1 TCATTTATCACTACCAC TCAtttatcactacCAC 18.9 1419 1419_1 ATCATTTATCACTACCAC ATcatttatcactaCCAC 21.8 1420 1420_1 CATCATTTATCACTACCAC CATcatttatcactacCAC 25.1 1421 1421_1 AACATCATTTATCACTACCAC AACatcatttatcactacCAC 30.5 1421 1421_2 AACATCATTTATCACTACCAC AacatcatttatcactaCCAC 40.4 1420 1420_2 CATCATTTATCACTACCAC CatcatttatcactaCCAC 34.3 1422 1422_1 AACATCATTTATCACTACCA AAcatcatttatcactACCA 34 1423 1423_1 CATCATTTATCACTACCA CATCatttatcactacCA 11.3 1424 1424_1 TAACATCATTTATCACTACCA TAacatcatttatcactaCCA 63.1 1425 1425_1 ACATCATTTATCACTACCA ACATcatttatcactacCA 19 1422 1422_2 AACATCATTTATCACTACCA AACatcatttatcactaCCA 25 1424 1424_2 TAACATCATTTATCACTACCA TaacatcatttatcactACCA 61.3 1425 1425_2 ACATCATTTATCACTACCA ACatcatttatcactACCA 23.5 1426 1426_1 TAACATCATTTATCACTACC TAACatcatttatcactaCC 33.6 1427 1427_1 ACATCATTTATCACTACC ACatcatttatcacTACC 32.3 1428 1428_1 TTAACATCATTTATCACTACC TTAacatcatttatcactaCC 75.5 1429 1429_1 AACATCATTTATCACTACC AACAtcatttatcactaCC 37.3 1430 1430_1 TTAACATCATTTATCACTAC TTaacatcatttatcaCTAC 69.1 1431 1431_1 TAACATCATTTATCACTAC TAacatcatttatcaCTAC 66.6 1432 1432_1 ATTAACATCATTTATCACTAC ATtaacatcatttatcaCTAC 84.2 1432 1432_2 ATTAACATCATTTATCACTAC ATtaacatcAtttatcaCTAC 62.8 1433 1433_1 ATTAACATCATTTATCACTA ATTaacatcatttatcaCTA 81.3 1434 1434_1 TTAACATCATTTATCACTA TTAacatcatttatcaCTA 74.5 1435 1435_1 TAATTAACATCATTTATCACT TAattaacatcatttatCACT 84.3 1435 1435_2 TAATTAACATCATTTATCACT TAattaacaTcatttatCACT 43.3 1436 1436_1 CTAATTAACATCATTTATCAC CTaattaacatcatttaTCAC 81.4 1436 1436_2 CTAATTAACATCATTTATCAC CTaattaacAtcatttaTCAC 46.7 1437 1437_1 CCTAATTAACATCATTTATCA CCtaattaacatcatttaTCA 93.8 1438 1438_1 CTAATTAACATCATTTATCA CTAattaacatcatttaTCA 89.6 1439 1439_1 CCTAATTAACATCATTTATC CCTAattaacatcatttaTC 69.4 1440 1440_1 CCCTAATTAACATCATTTATC CCctaattaacatcatttATC 86.3 1441 1441_1 CCTAATTAACATCATTTAT CCTaattaacatcattTAT 87.4 1442 1442_1 CCTAATTAACATCATTTA CCTAattaacatcattTA 66 1443 1443_1 CCCTAATTAACATCATTTA CCCtaattaacatcattTA 88.7 1444 1444_1 GCCCTAATTAACATCATTT GCCctaattaacatcatTT 87.9 1445 1445_1 CCCTAATTAACATCATTT CCCTaattaacatcatTT 75.6 1446 1446_1 CGGCCCTAATTAACAT CGGCcctaattaacAT 103 1447 1447_1 CTCGGCCCTAATTAA CTCggccctaatTAA 57.4 1448 1448_1 CACATATAACATATAAACAC CACAtataacatataaacaCA 61.7 A 1449 1449_1 TCACATATAACATATAAACA TCAcatataacatataaaCAC 43.6 C 1450 1450_1 ACTATCACATATAACATATA ACTAtcacatataacataTA 58.5 1451 1451_1 CACTATCACATATAACATATA CACTatcacatataacataTA 28.1 1452 1452_1 CACTATCACATATAACATAT CACtatcacatataacaTAT 52 1453 1453_1 CACTATCACATATAACATA CACTatcacatataacaTA 24.3 1454 1454_1 CACTATCACATATAACAT CACtatcacatataaCAT 40.1 1455 1455_1 CACTATCACATATAACA CACTatcacatataaCA 27 1456 1456_1 CAAAGTTTTCCCATTAC CAaagttttcccaTTAC 21 1457 1457_1 ACAAAGTTTTCCCATTA ACAaagttttcccaTTA 20.5 1458 1458_1 TCAGTCCAACATAACTC TCAGtccaacataacTC 15.2 1459 1459_1 CAGTCCAACATAACTC CAGtccaacataaCTC 23.5 1460 1460_1 ATCAGTCCAACATAACTC ATCAgtccaacataacTC 13.7 1461 1461_1 ATCAGTCCAACATAACT ATCAgtccaacataaCT 15.9 1462 1462_1 TAAACATTAAACCCTCCCAA TAaacattaaaccctccCAAA 87 A 1463 1463_1 AACATTAAACCCTCCCAA AAcattaaaccctcCCAA 68.4 1464 1464_1 TAAACATTAAACCCTCCCAA TaaacattaaaccctcCCAA 79.2 1465 1465_1 AAACATTAAACCCTCCCAA AAacattaaaccctcCCAA 70.8 1466 1466_1 TATAAACATTAAACCCTCCCA TAtaaacattaaaccctccCA 94 1467 1467_1 AACATTAAACCCTCCC AAcattaaacccTCCC 78.3 1468 1468_1 AAACATTAAACCCTCCC AAacattaaacccTCCC 89.4 1469 1469_1 TAAACATTAAACCCTCCC TAAacattaaaccctCCC 72.9 1470 1470_1 ATAAACATTAAACCCTCCC AtaaacattaaacccTCCC 86 1471 1471_1 TATAAACATTAAACCCTCC TAtaaacattaaaccCTCC 91.1 1472 1472_1 TAAACATTAAACCCTCC TAaacattaaaccCTCC 82.2 1473 1473_1 ACTATAAACATTAAACCCTCC ActataaacattaaaccCTCC 86.5 1474 1474_1 ATAAACATTAAACCCTCC ATaaacattaaaccCTCC 88.4 1475 1475_1 AACTATAAACATTAAACCCTC AActataaacattaaacCCTC 92.6 1476 1476_1 CTATAAACATTAAACCCTC CTataaacattaaacCCTC 82.9 1477 1477_1 ACTATAAACATTAAACCCTC ACtataaacattaaacCCTC 89.8 1478 1478_1 AAACTATAAACATTAAACCC AAactataaacattaaaCCCT 98.9 T 1479 1479_1 CTATAAACATTAAACCCT CTataaacattaaaCCCT 82.2 1480 1480_1 ACTATAAACATTAAACCCT ACtataaacattaaaCCCT 86.6 1481 1481_1 AACTATAAACATTAAACCCT AActataaacattaaaCCCT 89.5 1482 1482_1 GCTTTAAACTATAAACATT GCtttaaactataaaCATT 58.2 1483 1483_1 TGCTTTAAACTATAAACA TGCTttaaactataaaCA 57.2 1484 1484_1 CAGATTTATCACTATTA CAGAtttatcactatTA 15.4 1485 1485_1 TCACAGCCTATCACCAC TCacagcctatcacCAC 47.3 1485 1485_2 TCACAGCCTATCACCAC TCAcagcctatcaccAC 46.3 1486 1486_1 ATCACAGCCTATCACCA AtcacagcctatcACCA 56.9 1486 1486_2 ATCACAGCCTATCACCA ATCacagcctatcacCA 23.7 1487 1487_1 AATCACAGCCTATCACC AATCacagcctatcaCC 32.9 1487 1487_2 AATCACAGCCTATCACC AatcacagcctatCACC 52.2 1488 1488_1 ATCACAGCCTATCACC AtcacagcctatCACC 60.1 1489 1489_1 GCGTCACCCAAATCAC GCgtcacccaaatCAC 11 1490 1490_1 AGCGTCACCCAAATCA AG^(m)cgtcacccaaaTCA 17.4 1491 1491_1 AGCGTCACCCAAATC AG^(m)cgtcacccaAATC 18.8 1492 1492_1 CAGATCCTAAAATCACT CAGAtcctaaaatcaCT 71.8 1493 1493_1 TCAGATCCTAAAATCAC TCAgatcctaaaatCAC 66.2 1494 1494_1 AGTAAAACCAATCATCAT AGTaaaaccaatcatCAT 30.8 1495 1495_1 AGTAAAACCAATCATCA AGTaaaaccaatcaTCA 24.2 1496 1496_1 CCCTTCCATCTCTACTAAAA CccttccatctctactaaAA 89.7 1497 1497_1 ATAACTACATAACAAACCCA ATaactacataacaaaCCCA 69.1 1498 1498_1 AATAACTACATAACAAACCC AAtaactacataacaaaCCCA 77.8 A 1499 1499_1 AACTACATAACAAACCCA AActacataacaaaCCCA 62.9 1500 1500_1 TAACTACATAACAAACCCA TAactacataacaaaCCCA 65 1501 1501_1 ACTACATAACAAACCCA ACtacataacaaaCCCA 60.4 1502 1502_1 CAATAACTACATAACAAACC CAAtaactacataacaaaCCC 72.6 C 1503 1503_1 ATAACTACATAACAAACCC ATAactacataacaaaCCC 60.2 1504 1504_1 ACAATAACTACATAACAAAC ACAataactacataacaaACC 78.5 C 1504 1504_2 ACAATAACTACATAACAAAC ACAAtaactacataacaaaCC 80.9 C 1505 1505_1 TGAATTCACAATAACTACA TGaattcacaataacTACA 38.1 1506 1506_1 GCACATTTTTCTTAAACT GCACatttttcttaaaCT 62.2 1507 1507_1 GCTATACCTAAAACAATCT GCTatacctaaaacaaTCT 62.2 1508 1508_1 GCTATACCTAAAACAATC GCTAtacctaaaacaaTC 68.9 1509 1509_1 CCCTTGTAACTAAAAAT CCCTtgtaactaaaaAT 100 1510 1510_1 CCCCTTGTAACTAAAAA CCCCttgtaactaaaAA 86.1 1511 1511_1 CCCCTTGTAACTAAAA CCCCttgtaactaaAA 101 1512 1512_1 ACCCCTTGTAACTAAA ACCCcttgtaactaAA 88.8 1513 1513_1 CACCCCTTGTAACTAA CAccccttgtaaCTAA 80.4 1514 1514_1 ACACCCCTTGTAACTA ACACcccttgtaacTA 72.4 1515 1515_1 GCTAAAACTAATCATCT GCTaaaactaatcaTCT 72.2 1516 1516_1 GGCTAAAACTAATCAT GGCtaaaactaatCAT 70.8 1517 1517_1 TTACCCTTCATATATACATCT TtacccttcatatatacaTCT 89.4 1518 1518_1 ATTACCCTTCATATATACATC AttacccttcatatataCATC 82.4 1519 1519_1 TTACCCTTCATATATACATC TTAcccttcatatatacATC 56.3 1520 1520_1 CATTACCCTTCATATATACAT CAttacccttcatatataCAT 84.2 1521 1521_1 TTACCCTTCATATATACAT TTAcccttcatatataCAT 55.3 1522 1522_1 ATTACCCTTCATATATACAT ATTacccttcatatataCAT 49.3 1523 1523_1 ACATTACCCTTCATATATACA ACAttacccttcatatataCA 55.2 1523 1523_2 ACATTACCCTTCATATATACA AcattacccttcatataTACA 63.4 1524 1524_1 TTACCCTTCATATATACA TTACccttcatatataCA 46.9 1525 1525_1 CATTACCCTTCATATATACA CattacccttcatataTACA 66 1526 1526_1 ATTACCCTTCATATATACA ATTAcccttcatatataCA 36.7 1527 1527_1 ATTACCCTTCATATATAC ATTacccttcatataTAC 46.6 1528 1528_1 TTACCCTTCATATATAC TTAcccttcatataTAC 56.9 1529 1529_1 CATTACCCTTCATATATAC CATtacccttcatataTAC 63.4 1530 1530_1 ACATTACCCTTCATATATAC ACAttacccttcatataTAC 34.5 1531 1531_1 TACATTACCCTTCATATATAC TAcattacccttcatataTAC 76.9 1532 1532_1 CATTACCCTTCATATATA CAttacccttcataTATA 76.5 1533 1533_1 TACATTACCCTTCATATATA TACattacccttcatatATA 36.5 1534 1534_1 ATTACCCTTCATATATA ATtacccttcataTATA 78 1535 1535_1 ACATTACCCTTCATATATA ACattacccttcataTATA 59.5 1536 1536_1 CATTACCCTTCATATAT CATtacccttcataTAT 73.7 1537 1537_1 ACATTACCCTTCATATAT ACAttacccttcataTAT 46.1 1538 1538_1 TACATTACCCTTCATATAT TACattacccttcataTAT 36.9 1539 1539_1 ACATTACCCTTCATATA ACattacccttcaTATA 54.2 1540 1540_1 TACATTACCCTTCATATA TAcattacccttcaTATA 71.5 1541 1541_1 TACATTACCCTTCATAT TACattacccttcaTAT 34.5 1542 1542_1 GATTCTTATACTTACTA GATtcttatacttaCTA 46.2 1543 1543_1 TGATTCTTATACTTACT TGattcttatactTACT 45.7 1544 1544_1 ATGATTCTTATACTTACT ATGAttcttatacttaCT 54 1545 1545_1 GCCTCATTTTTACCTTT GCctcatttttaccTTT 82.6 1546 1546_1 ACCAATCTTCTATTTTA ACCAatcttctatttTA 94.8 1547 1547_1 CAACCAATCTTCTATTTTA CAACcaatcttctatttTA 90.3 1548 1548_1 GCAACCAATCTTCTATTTT GCAAccaatcttctattTT 88.3 1549 1549_1 GCAACCAATCTTCTATTT GCAaccaatcttctaTTT 85 1550 1550_1 GCAACCAATCTTCTATT GCaaccaatcttcTATT 87.3 1551 1551_1 TGCAACCAATCTTCTATT TGCaaccaatcttctaTT 90.2 1552 1552_1 TAACTGCAACCAATCTT TAactgcaaccaaTCTT 88.2 1553 1553_1 TGAATACAACACACATCA TGAatacaacacacaTCA 97.4 1554 1554_1 ATGAATACAACACACATCA ATGAatacaacacacatCA 84.4 1555 1555_1 TAAAAATATAACTACTCCT TAaaaatataactacTCCT 99.8 1556 1556_1 GTAAAAATATAACTACTCC GTaaaaatataactaCTCC 93.7 1557 1557_1 TCAACTGATACCCACAA TCAactgatacccaCAA 57.7 1558 1558_1 TGTCTTAACATTTTTCTT TGTCttaacatttttcTT 63.1 1559 1559_1 CCACTTCAAACTTTTAATTAA CCActtcaaacttttaatTAA 85 1560 1560_1 CCACTTCAAACTTTTAATTA CCACttcaaacttttaatTA 84.9 1561 1561_1 CCCACTTCAAACTTTTAATTA CCcacttcaaacttttaaTTA 88.7 1562 1562_1 CCACTTCAAACTTTTAATT CCACttcaaacttttaaTT 79.1 1563 1563_1 CCCACTTCAAACTTTTAATT CCCacttcaaacttttaaTT 86.2 1564 1564_1 ACCCACTTCAAACTTTTAATT ACCcacttcaaacttttaaTT 100 1565 1565_1 CCACTTCAAACTTTTAAT CCACttcaaacttttaAT 85.3 1566 1566_1 ACCCACTTCAAACTTTTAAT ACCcacttcaaacttttAAT 88.8 1567 1567_1 AACCCACTTCAAACTTTTAAT AACCcacttcaaacttttaAT 92.3 1568 1568_1 CCCACTTCAAACTTTTAA CCCacttcaaactttTAA 79.9 1569 1569_1 ACCCACTTCAAACTTTTAA ACCcacttcaaactaTAA 82.5 1570 1570_1 CCCACTTCAAACTTTTA CCCacttcaaactttTA 79.6 1571 1571_1 ACCCACTTCAAACTTTTA ACCcacttcaaacttTTA 77.2 1572 1572_1 AACCCACTTCAAACTTTTA AACCcacttcaaactttTA 86.2 1573 1573_1 ACCCACTTCAAACTTTT ACCCacttcaaacttTT 93.3 1574 1574_1 AACCCACTTCAAACTTTT AACCcacttcaaacttTT 82.7 1575 1575_1 AACCCACTTCAAACTTT AACCcacttcaaactTT 85.8 1576 1576_1 GGACTCTATTAATCAA GGActctattaatCAA 91.7 1577 1577_1 GAATATTCTACTCTTCT GAatattctactcTTCT 95.3 1578 1578_1 CTGTATTTACCAATTCAA CTGtatttaccaattCAA 90.8 1579 1579_1 CTGTATTTACCAATTCA CTGTatttaccaattCA 88.7 1580 1580_1 ACTGTATTTACCAATTCA ACTGtatttaccaattCA 97.3 1581 1581_1 ACTGTATTTACCAATTC ACTGtatttaccaatTC 104 1582 1582_1 CACTGTATTTACCAATT CACTgtatttaccaaTT 91.1 1583 1583_1 TCACTGTATTTACCAAT TCACtgtatttaccaAT 98.6 1584 1584_1 CCAACTACTTTACTTTTCAAA CCaactactttacttttCAAA 84.3 1585 1585_1 CCAACTACTTTACTTTTCAA CCaactactttactttTCAA 80 1586 1586_1 ACCAACTACTTTACTTTTCAA ACcaactactttactttTCAA 85.1 1585 1585_2 CCAACTACTTTACTTTTCAA CCAactactttacttttCAA 75.2 1587 1587_1 CCAACTACTTTACTTTTCA CCAactactttacttttCA 71.9 1588 1588_1 TACCAACTACTTTACTTTTCA TaccaactactttacttTTCA 82.8 1587 1587_2 CCAACTACTTTACTTTTCA CCAactactttactttTCA 67.7 1589 1589_1 ACCAACTACTTTACTTTTCA ACcaactactttactttTCA 84 1590 1590_1 TACCAACTACTTTACTTTTC TACcaactactttacttTTC 75.3 1591 1591_1 GTACCAACTACTTTACTTT GTACcaactactttactTT 75.8 1592 1592_1 GTACCAACTACTTTACTT GTAccaactactttaCTT 65.7 1593 1593_1 GTACCAACTACTTTACT GTACcaactactttaCT 74.5 1594 1594_1 TGTACCAACTACTTTACT TGtaccaactacttTACT 87.1 1595 1595_1 TTGTACCAACTACTTTAC TTGtaccaactacttTAC 73.3 1596 1596_1 GTACCAACTACTTTAC GTAccaactacttTAC 72.5 1597 1597_1 TGTACCAACTACTTTAC TGTaccaactacttTAC 66 1598 1598_1 TTGTACCAACTACTTTA TTGTaccaactacttTA 49.3 1599 1599_1 ATTTCATTTTTCTTTTAATA ATTtcatttttcttttaATA 98.6 1599 1599_2 ATTTCATTTTTCTTTTAATA ATTTcatttttcttttaaTA 90.7 1600 1600_1 CCTAATTTCATTTTTCTTTT CCtaatttcatttttcTTTT 69.2 1601 1601_1 TCCTAATTTCATTTTTCTTT TCctaatttcatttttCTTT 47 1602 1602_1 TTCTTCATTATACCATCAAAT TTCTtcattataccatcaaAT 29.4 1603 1603_1 TTTCTTCATTATACCATCAAA TTTCttcattataccatcaAA 24.1 1604 1604_1 TTTTCTTCATTATACCATCAA TTttcttcattataccaTCAA 14.3 1605 1605_1 TCTTCATTATACCATCAA TCttcattataccaTCAA 5.02 1606 1606_1 TTTCTTCATTATACCATCAA TTtcttcattataccaTCAA 21.2 1607 1607_1 TTCTTCATTATACCATCAA TTCttcattataccatCAA 5.83 1608 1608_1 ATATTTTCTTCATTATACCAT AtattttcttcattataCCAT 76.1 1609 1609_1 ATATTTTCTTCATTATACCA ATattttcttcattataCCA 40.2 1610 1610_1 AATATTTTCTTCATTATACC AAATattacttcattataCCA 37 1611 1611_1 AAATATTTTCTTCATTATACC AAatattttcttcattaTACC 23.4 1612 1612_1 ATATTTTCTTCATTATACC ATattttcttcattaTACC 14.2 1613 1613_1 AATATTTTCTTCATTATACC AATAttttcttcattataCC 68 1614 1614_1 TAAATATTTTCTTCATTATA TAaatattttcttcatTATA 96.8 1615 1615_1 TTTTCCTTCATCTACTTCT TTTtccttcatctacttCT 42.8 1616 1616_1 ATTTTCCTTCATCTACTTCT ATtttccttcatctacttCT 76 1617 1617_1 AATTTTCCTTCATCTACTTC AATTttccttcatctactTC 54.9 1618 1618_1 AGAATTTTCCTTCATCTA AgaattttccttcaTCTA 58 1619 1619_1 CAGAATTTTCCTTCATCT CAgaattttccttcATCT 23.5 1620 1620_1 TCAGAATTTTCCTTCATC TCAgaattttccttcaTC 29.7 1621 1621_1 CTAGAAATATCTCACATT CTAGaaatatctcacaTT 64.6 1622 1622_1 CTAGAAATATCTCACAT CTAgaaatatctcaCAT 75.5 1623 1623_1 ACTAGAAATATCTCACA ACTAgaaatatctcaCA 53.2 1624 1624_1 ATTAGCCATTAATCTAT ATtagccattaatCTAT 71.9 1625 1625_1 TTGTTACAAAATAATCCA TTgttacaaaataaTCCA 12 1625 1625_2 TTGTTACAAAATAATCCA TTGttacaaaataatCCA 23.8 1626 1626_1 TTATTTTTTACATTAACTA TTAttttttacattaaCTA 92.1 1627 1627_1 TGCCAAAATACTAACATCA TGCcaaaatactaacaTCA 32 1628 1628_1 GCCAAAATACTAACATCA GCCaaaatactaacaTCA 27.8 1629 1629_1 TGCCAAAATACTAACATC TGCCaaaatactaacaTC 61.5 1630 1630_1 GAGTACAACACTTACA GAGTacaacacttaCA 31.8 1631 1631_1 CACATCCATTCATTTTAT CACatccattcatttTAT 30.6 1632 1632_1 CCACATCCATTCATTTTAT CCAcatccattcattttAT 21.7 1633 1633_1 CCACATCCATTCATTTTA CCacatccattcattTTA 20 1634 1634_1 TATGCCACATCCATTCAT TatgccacatccattCAT 47 1635 1635_1 TTATGCCACATCCATTCA TtatgccacatccaTTCA 20.7 1636 1636_1 TATGCCACATCCATTCA TAtgccacatccattCA 43.3 1637 1637_1 TTATGCCACATCCATTC TtatgccacatccATTC 19.5 1638 1638_1 ATTATGCCACATCCATT ATtatgccacatcCATT 25.1 1639 1639_1 AGTTTCATATTTTTAATC AGTttcatatttttaATC 65.9 1640 1640_1 ATCACTGCACACTTTCC ATCactgcacactttCC 12.9 1641 1641_1 AAGCTCTTTCCAAATTCT AAGCtctttccaaattCT 34.6 1642 1642_1 TAGTTCTTAACTCTTCTC TagttcttaactctTCTC 19.2 1643 1643_1 TTAGTTCTTAACTCTTC TTAGttcttaactctTC 18 1644 1644_1 AGCTTCAAATACTCAAA AGCTtcaaatactcaAA 74.5 1645 1645_1 TTTCAAAGCCACACCTA TttcaaagccacaCCTA 66.9 1646 1646_1 AATATCCTCATTACCCATT AATAtcctcattacccaTT 52.3 1647 1647_1 TATCCTCATTACCCATT TAtcctcattaccCATT 53.4 1647 1647_2 TATCCTCATTACCCATT TATCctcattacccaTT 22.3 1648 1648_1 ATATCCTCATTACCCATT ATAtcctcattacccATT 55.8 1649 1649_1 AATATCCTCATTACCCAT AAtatcctcattacCCAT 46.1 1650 1650_1 TAATATCCTCATTACCCAT TAAtatcctcattaccCAT 58.3 1651 1651_1 TTAATATCCTCATTACCCAT TTaatatcctcattaccCAT 61.8 1652 1652_1 ATATCCTCATTACCCAT ATAtcctcattaccCAT 56.2 1653 1653_1 AATATCCTCATTACCCA AAtatcctcattaCCCA 49.7 1654 1654_1 TAATATCCTCATTACCCA TAATatcctcattaccCA 45.6 1655 1655_1 TTTAATATCCTCATTACCCA TttaatatcctcattacCCA 67.5 1656 1656_1 TTAATATCCTCATTACCCA TTaatatcctcattacCCA 36 1656 1656_2 TTAATATCCTCATTACCCA TTAAtatcctcattaccCA 57.9 1654 1654_2 TAATATCCTCATTACCCA TAAtatcctcattacCCA 40 1653 1653_2 AATATCCTCATTACCCA AATatcctcattacCCA 44.8 1657 1657_1 ATTTAATATCCTCATTACCC AtttaatatcctcattaCCC 59.9 1658 1658_1 TAATATCCTCATTACCC TAATatcctcattacCC 32.9 1659 1659_1 TTAATATCCTCATTACCC TTAAtatcctcattacCC 42 1660 1660_1 TTTAATATCCTCATTACCC TttaatatcctcattACCC 41.1 1661 1661_1 AATTTAATATCCTCATTACCC AatttaatatcctcattaCCC 61 1662 1662_1 TTTAATATCCTCATTACC TTTAatatcctcattaCC 60.6 1663 1663_1 AATTTAATATCCTCATTACC AAtttaatatcctcatTACC 58.8 1664 1664_1 TTAATATCCTCATTACC TTaatatcctcatTACC 42.3 1665 1665_1 AAATTTAATATCCTCATTACC AAatttaatatcctcatTACC 55.9 1666 1666_1 ATTTAATATCCTCATTACC ATttaatatcctcatTACC 55.5 1667 1667_1 TAAATTTAATATCCTCATTAC TAaatttaatatcctcaTTAC 78 1668 1668_1 TTAAATTTAATATCCTCATTA TTAaatttaatatcctcaTTA 95.2 1669 1669_1 CTTAAATTTAATATCCTCATT CTtaaatttaatatcctCATT 73.2 1670 1670_1 TCTTAAATTTAATATCCTCAT TCttaaatttaatatccTCAT 46.8 1671 1671_1 TCTTAAATTTAATATCCTCA TCttaaatttaatatcCTCA 29.8 1672 1672_1 TTCTTAAATTTAATATCCTCA TTCttaaatttaatatccTCA 35 1673 1673_1 TTCTTAAATTTAATATCCTC TTcttaaatttaatatCCTC 36.2 1674 1674_1 TCTTAAATTTAATATCCTC TCttaaatttaatatCCTC 25.1 1675 1675_1 TTCTTAAATTTAATATCCT TTCttaaatttaatatCCT 46.9 1676 1676_1 TCTTAAATTTAATATCCT TCttaaatttaataTCCT 50.9 1677 1677_1 AATAGCCTTTATTCTAC AAtagcctttattCTAC 33.6 1678 1678_1 CAGCAACAATTATTAATA CAGCaacaattattaaTA 70.5 1679 1679_1 CCAGCAACAATTATTAAT CCAGcaacaattattaAT 64.2 1680 1680_1 ACCAGCAACAATTATTAA ACCagcaacaattatTAA 20.5 1680 1680_2 ACCAGCAACAATTATTAA ACCAgcaacaattattAA 39.7 1681 1681_1 ACCAGCAACAATTATTA ACCAgcaacaattatTA 39.4 1682 1682_1 TACCAGCAACAATTATT TACCagcaacaattaTT 26.4 1683 1683_1 CCCCAAATCTAAAACACTTC CCccaaatctaaaacacTTC 79.4 1684 1684_1 AACCCCAAATCTAAAACACT AACCccaaatctaaaacacTT 82 T 1685 1685_1 CCCCAAATCTAAAACACTT CCCcaaatctaaaacacTT 86.4 1686 1686_1 AACCCCAAATCTAAAACACT AACCccaaatctaaaacaCT 75.2 1687 1687_1 ACCCCAAATCTAAAACACT ACcccaaatctaaaaCACT 72.5 1688 1688_1 ACCCCAAATCTAAAACAC ACCccaaatctaaaaCAC 80.9 1689 1689_1 GCAAATATTCACAAATCCT GCAaatattcacaaatCCT 20.7 1689 1689_2 GCAAATATTCACAAATCCT GCaaatattcacaaaTCCT 29.3 1690 1690_1 ACTATTTAACACACATTATCA ACTatttaacacacattaTCA 36.6 1691 1691_1 CTATTTAACACACATTATCA CTAtttaacacacattaTCA 49.6 1692 1692_1 TACTATTTAACACACATTATC TACTatttaacacacattaTC 52.4 1693 1693_1 ACTATTTAACACACATTATC ACTAtttaacacacattaTC 51.8 1694 1694_1 TACTATTTAACACACATTAT TACtatttaacacacatTAT 91.1 1695 1695_1 CTACTATTTAACACACATTAT CTActatttaacacacatTAT 72.7 1696 1696_1 CTACTATTTAACACACATTA CTACtatttaacacacatTA 47.4 1697 1697_1 ACTACTATTTAACACACATTA ACTActatttaacacacatTA 38.3 1698 1698_1 CTACTATTTAACACACATT CTACtatttaacacacaTT 41.6 1699 1699_1 ACTACTATTTAACACACATT ACtactatttaacacaCATT 40.3 1700 1700_1 ACTACTATTTAACACACAT ACTactatttaacacaCAT 36.8 1701 1701_1 CTACTATTTAACACACA CTACtatttaacacaCA 45.9 1702 1702_1 ACTACTATTTAACACACA ACTActatttaacacaCA 32.6 1703 1703_1 TATAGACCCTTAATATT TATAgacccttaataTT 41.4 1704 1704_1 TTATAGACCCTTAATAT TTAtagacccttaaTAT 68.5 1705 1705_1 CATCACAAAATAACCTATCAT CAtcacaaaataacctaTCAT 86.8 1706 1706_1 TCATCACAAAATAACCTATCA TCAtcacaaaataacctaTCA 67.4 1707 1707_1 TTCATCACAAAATAACCTATC TTCAtcacaaaataacctaTC 49 1708 1708_1 TTCATCACAAAATAACCTA TTcatcacaaaataaCCTA 76.4 1709 1709_1 TTTCATCACAAAATAACCTA TTtcatcacaaaataaCCTA 88.6 1710 1710_1 TCATCACAAAATAACCTA TCatcacaaaataaCCTA 59.2 1711 1711_1 TTTTCATCACAAAATAACCTA TTttcatcacaaaataaCCTA 86.1 1712 1712_1 ATTTTCATCACAAAATAACCT ATTttcatcacaaaataaCCT 64.8 1713 1713_1 TATTTTCATCACAAAATAACC TATTttcatcacaaaataaCC 76.9 1713 1713_2 TATTTTCATCACAAAATAACC TATTttcatcaCaaaataaCC 56 1714 1714_1 GTATTTTCATCACAAAATA GTATtttcatcacaaaaTA 47 1715 1715_1 TTACCTAGATCACTCC TtacctagatcaCTCC 73.1 1716 1716_1 CTTACCTAGATCACTC CTTacctagatcaCTC 81.5 1717 1717_1 CCTTACCTAGATCACT CCTtacctagatcaCT 95.9 1718 1718_1 TAACTGCTCCTTAATCC TAActgctccttaatCC 34.8 1719 1719_1 TCTAGCAATCCTCTCCT TCtagcaatcctctcCT 64.2 1720 1720_1 TTCTAGCAATCCTCTCC TtctagcaatcctcTCC 70.4 1721 1721_1 TTTTCACCTACTAATATTCAT TTttcacctactaatatTCAT 55.3 1722 1722_1 TTTCACCTACTAATATTCAT TTtcacctactaatatTCAT 66.2 1723 1723_1 TTCACCTACTAATATTCAT TTCacctactaatattCAT 17.2 1724 1724_1 TCACCTACTAATATTCAT TCAcctactaatattCAT 23.5 1725 1725_1 TCACCTACTAATATTCA TCAcctactaatatTCA 21.1 1726 1726_1 TTTCACCTACTAATATTCA TTTCacctactaatattCA 16.7 1727 1727_1 TTTTCACCTACTAATATTCA TTttcacctactaataTTCA 31.3 1728 1728_1 TTTTTCACCTACTAATATTCA TTtttcacctactaataTTCA 45.3 1729 1729_1 TTCACCTACTAATATTCA TTCAcctactaatattCA 24.7 1730 1730_1 ATTTTTCACCTACTAATATTC ATTtttcacctactaataTTC 48.5 1731 1731_1 TTTTTCACCTACTAATATTC TTTttcacctactaataTTC 31.5 1732 1732_1 TATTTTTCACCTACTAATATT TAtttttcacctactaaTATT 90.2 1733 1733_1 TATTTTTCACCTACTAATAT TATttttcacctactaaTAT 89.1 1734 1734_1 TTATTTTTCACCTACTAATAT TTAtttttcacctactaaTAT 86.1 1735 1735_1 TTATTTTTCACCTACTAATA TTATttttcacctactaaTA 52.9 1736 1736_1 TATTTTTCACCTACTAATA TATTtttcacctactaaTA 54.9 1737 1737_1 TTTATTTTTCACCTACTAATA TTTAtttttcacctactaaTA 52 1738 1738_1 TTTATTTTTCACCTACTAA TTtatttttcacctaCTAA 51.2 1739 1739_1 TTTATTTTTCACCTACTA TTTatttttcacctaCTA 19 1740 1740_1 CTCAACTTCTACTACTAATT CTCAacttctactactaaTT 19.7 1741 1741_1 TCTCAACTTCTACTACTAATT TCTCaacttctactactaaTT 25.8 1742 1742_1 CTCTCAACTTCTACTACTAAT CTCtcaacttctactactAAT 43 1743 1743_1 CTCAACTTCTACTACTAAT CTCAacttctactactaAT 20.1 1744 1744_1 TCTCAACTTCTACTACTAAT TCTCaacttctactactaAT 22.8 1745 1745_1 TCTCTCAACTTCTACTACTAA TCtctcaacttctactacTAA 58.4 1746 1746_1 CTCAACTTCTACTACTAA CTcaacttctactaCTAA 47.3 1747 1747_1 TCTCAACTTCTACTACTAA TCtcaacttctactaCTAA 56.3 1748 1748_1 CTCAACTTCTACTACTA CTCaacttctactaCTA 10.7 1749 1749_1 TTCTCTCAACTTCTACTACTA TtctctcaacttctactaCTA 79.1 1750 1750_1 TCTCTCAACTTCTACTACTA TCtctcaacttctactacTA 61.2 1751 1751_1 TCTCAACTTCTACTACTA TCtcaacttctactaCTA 66.8 1752 1752_1 CTCTCAACTTCTACTACTA CtctcaacttctactACTA 61.7 1753 1753_1 CTCTCAACTTCTACTACT CTCtcaacttctactaCT 37.9 1754 1754_1 TCTCAACTTCTACTACT TCtcaacttctacTACT 51.1 1755 1755_1 TCTCTCAACTTCTACTACT TCtctcaacttctactACT 44.2 1756 1756_1 TTTCTCTCAACTTCTACTACT TTtctctcaacttctactACT 65.7 1757 1757_1 TTCTCTCAACTTCTACTACT TTCtctcaacttctactaCT 33.5 1758 1758_1 TTTCTCTCAACTTCTACTAC TTtctctcaacttctacTAC 67.9 1759 1759_1 CTCTCAACTTCTACTAC CTCtcaacttctacTAC 34.1 1760 1760_1 TTCTCTCAACTTCTACTAC TtctctcaacttctaCTAC 63.8 1761 1761_1 TTTTCTCTCAACTTCTACTAC TTTTctctcaacttctactAC 20.6 1762 1762_1 TCTCTCAACTTCTACTAC TCtctcaacttctacTAC 49.7 1763 1763_1 TTTCTCTCAACTTCTACTA TTtctctcaacttctaCTA 60.2 1764 1764_1 TTTTCTCTCAACTTCTACTA TtttctctcaacttctACTA 52.2 1765 1765_1 TTTTTCTCTCAACTTCTACTA TTTttctctcaacttctacTA 40.2 1766 1766_1 TCTCTCAACTTCTACTA TCtctcaacttctaCTA 47.5 1767 1767_1 TTCTCTCAACTTCTACTA TTCtctcaacttctacTA 35.1 1768 1768_1 TTTCTCTCAACTTCTACT TTTCtctcaacttctaCT 28.6 1769 1769_1 TTTTCTCTCAACTTCTACT TTTtctctcaacttctaCT 44.1 1770 1770_1 CTTTTTCTCTCAACTTCTACT CtttttctctcaacttctaCT 99.8 1771 1771_1 TTTTTCTCTCAACTTCTACT TTTttctctcaacttctaCT 43.7 1772 1772_1 CTTTTTCTCTCAACTTCTAC CTTtttctctcaacttctAC 36.2 1773 1773_1 ACTTTTTCTCTCAACTTCTAC ACTttttctctcaacttctAC 35.6 1774 1774_1 TTTTCTCTCAACTTCTAC TtttctctcaacttCTAC 38.6 1775 1775_1 TTTTTCTCTCAACTTCTAC TttttctctcaacttCTAC 42.1 1776 1776_1 CTTTTTCTCTCAACTTCTA CTttttctctcaacttCTA 41.2 1777 1777_1 TACTTTTTCTCTCAACTTCTA TactttttctctcaacttCTA 69.4 1778 1778_1 ACTTTTTCTCTCAACTTCTA ActttttctctcaacttCTA 66.2 1779 1779_1 TTTTTCTCTCAACTTCTA TttttctctcaactTCTA 35.5 1780 1780_1 TACTTTTTCTCTCAACTTCT TActttttctctcaacttCT 65 1781 1781_1 TTACTTTTTCTCTCAACTTCT TtactttttctctcaactTCT 62.1 1782 1782_1 TTACTTTTTCTCTCAACTTC TTActttttctctcaactTC 38.9 1783 1783_1 TACTTTTTCTCTCAACTTC TACtttttctctcaactTC 34 1784 1784_1 ACTTTTTCTCTCAACTTC ActttttctctcaaCTTC 19.7 1785 1785_1 TTACTTTTTCTCTCAACTT TTActttttctctcaaCTT 22 1786 1786_1 TACTTTTTCTCTCAACTT TACtttttctctcaaCTT 22.3 1787 1787_1 TTACTTTTTCTCTCAACT TTACtttttctctcaaCT 11.6 1788 1788_1 GTTACTTTTTCTCTCAACT GTtactttttctctcAACT 43.2 1789 1789_1 GTTACTTTTTCTCTCAAC GTtactttttctctCAAC 29 1790 1790_1 GTTACTTTTTCTCTCAA GTtactttttctcTCAA 5.53 1791 1791_1 AGTTACTTTTTCTCTCAA AGTtactttttctctCAA 6.5 1792 1792_1 CTTTTACATTCCCATTAACA CTTTtacattcccattaaCA 24.5 1793 1793_1 CACTTTTACATTCCCATTAAC CACttttacattcccattaAC 25.3 1794 1794_1 CTTTTACATTCCCATTAAC CTtttacattcccatTAAC 21.5 1795 1795_1 ACTTTTACATTCCCATTAAC ACttttacattcccatTAAC 23 1796 1796_1 ACTTTTACATTCCCATTAA ACttttacattcccaTTAA 30 1797 1797_1 CTTTTACATTCCCATTAA CTtttacattcccaTTAA 27.4 1798 1798_1 CACTTTTACATTCCCATTAA CActtttacattcccaTTAA 28 1798 1798_2 CACTTTTACATTCCCATTAA CACttttacattcccatTAA 15.9 1799 1799_1 TACACTTTTACATTCCCATTA TAcacttttacattcccatTA 52.2 1800 1800_1 ACTTTTACATTCCCATTA ACTtttacattcccaTTA 13.1 1801 1801_1 CACTTTTACATTCCCATTA CActtttacattcccATTA 15.7 1802 1802_1 ACACTTTTACATTCCCATTA ACacttttacattcccaTTA 19.1 1802 1802_2 ACACTTTTACATTCCCATTA ACActtttacattcccatTA 9.66 1803 1803_1 CACTTTTACATTCCCATT CActtttacattccCATT 10.2 1804 1804_1 TACACTTTTACATTCCCATT TACacttttacattcccaTT 10.3 1805 1805_1 ACACTTTTACATTCCCATT ACACttttacattcccaTT 4.51 1805 1805_2 ACACTTTTACATTCCCATT ACacttttacattccCATT 6.8 1806 1806_1 TACACTTTTACATTCCCAT TACacttttacattccCAT 3.53 1806 1806_2 TACACTTTTACATTCCCAT TACActtttacattcccAT 4.79 1807 1807_1 TACACTTTTACATTCCCA TACacttttacattccCA 6.35 1808 1808_1 GTACACTTTTACATTCCCA GtacacttttacattcCCA 3 1808 1808_2 GTACACTTTTACATTCCCA GTacacttttacattccCA 16.3 1809 1809_1 GTACACTTTTACATTCCC GTAcacttttacattcCC 4.33 1810 1810_1 TACACTTTTACATTCCC TACacttttacattcCC 3.26 1811 1811_1 TGTACACTTTTACATTCCC TGtacacttttacattcCC 12.3 1809 1809_2 GTACACTTTTACATTCCC GtacacttttacattCCC 2.49 1812 1812_1 TGTACACTTTTACATTCC TGtacacttttacatTCC 2.47 1813 1813_1 CTGTACACTTTTACATTC CTGtacacttttacaTTC 1.89 1814 1814_1 ATCTTATTTACATCTTCC ATcttatttacatcTTCC 5.41 1815 1815_1 GAATCTTATTTACATCTTC GAatcttatttacatCTTC 25.8 1816 1816_1 GAATCTTATTTACATCTT GAatcttatttacaTCTT 19.1 1817 1817_1 TGAATCTTATTTACATCT TGAatcttatttacaTCT 41.3 1818 1818_1 ATTCAGCTTTTTCAATC ATTCagctttttcaaTC 16.8 1819 1819_1 TTAATTTTCCCTTCACTCCT TtaattttcccttcactcCT 85.8 1820 1820_1 TTAATTTTCCCTTCACTCC TtaattttcccttcactCC 85.8 1821 1821_1 TTAATTTTCCCTTCACTC TtaattttcccttcACTC 51 1822 1822_1 GTTAATTTTCCCTTCACTC GttaattttcccttcACTC 27.2 1823 1823_1 CAAAATTACTTCTTTTATCAT CAaaattacttcttttaTCAT 86.7 1823 1823_2 CAAAATTACTTCTTTTATCAT CAaaattacTtcttttaTCAT 51.5 1824 1824_1 CCAAAATTACTTCTTTTATCA CCAaaattacttcttttaTCA 31.3 1824 1824_2 CCAAAATTACTTCTTTTATCA CCaaaattacttcttttATCA 36 1825 1825_1 TCCAAAATTACTTCTTTTATC TCcaaaattacttctttTATC 40.9 1826 1826_1 TCCAAAATTACTTCTTTTAT TCCaaaattacttctttTAT 50.2 1827 1827_1 CCAAAATTACTTCTTTTAT CCAaaattacttctttTAT 70 1828 1828_1 TTCCAAAATTACTTCTTTTAT TTCcaaaattacttctttTAT 64.9 1829 1829_1 TCCAAAATTACTTCTTTTA TCCAaaattacttctttTA 36.9 1830 1830_1 TTCCAAAATTACTTCTTTTA TTCCaaaattacttctttTA 52.2 1831 1831_1 GTTCCAAAATTACTTCTTT GTTCcaaaattacttctTT 54.8 1832 1832_1 GTTCCAAAATTACTTCTT GTtccaaaattactTCTT 12.5 1833 1833_1 TGTTCCAAAATTACTTCT TGTtccaaaattactTCT 20.1 1834 1834_1 ATGTTCCAAAATTACTTC ATGTtccaaaattactTC 23.8 1835 1835_1 CATATTTTACTCTTTTTATT CATAttttactctttttaTT 90.6 1836 1836_1 CCATATTTTACTCTTTTTAT CCATattttactctttttAT 35.4 1836 1836_2 CCATATTTTACTCTTTTTAT CCAtattttactcttaTAT 60.8 1837 1837_1 CCCATATTTTACTCTTTTTAT CccatattttactctttTTAT 75.8 1838 1838_1 CATATTTTACTCTTTTTAT CATattttactcttttTAT 83.2 1839 1839_1 CCCATATTTTACTCTTTTTA CCcatattttactcttttTA 81.1 1840 1840_1 CCATATTTTACTCTTTTTA CCatattttactcttTTTA 24.7 1841 1841_1 ACCCATATTTTACTCTTTTTA AcccatattttactcttTTTA 59 1842 1842_1 CCATATTTTACTCTTTTT CCATattttactctttTT 21.6 1843 1843_1 CCCATATTTTACTCTTTTT CCcatattttactcttTTT 77.2 1844 1844_1 ACCCATATTTTACTCTTTTT ACccatattttactctTTTT 97.4 1845 1845_1 TACCCATATTTTACTCTTTTT TAcccatattttactcttTTT 58.6 1846 1846_1 TACCCATATTTTACTCTTTT TACccatattttactctTTT 20.4 1847 1847_1 CCCATATTTTACTCTTTT CCCatattttactcttTT 93.2 1848 1848_1 ACCCATATTTTACTCTTTT ACCcatattttactcttTT 21.8 1846 1846_2 TACCCATATTTTACTCTTTT TAcccatattttactcTTTT 22.5 1849 1849_1 TTACCCATATTTTACTCTTTT TTAcccatattttactcttTT 41.4 1850 1850_1 TACCCATATTTTACTCTTT TAcccatattttactCTTT 18.9 1851 1851_1 ACCCATATTTTACTCTTT ACCcatattttactcTTT 13.4 1852 1852_1 TTACCCATATTTTACTCTTT TTacccatattttactCTTT 14.5 1853 1853_1 TTTACCCATATTTTACTCTTT TTTacccatattttactcTTT 22.2 1852 1852_2 TTACCCATATTTTACTCTTT TTACccatattttactctTT 16.7 1853 1853_2 TTTACCCATATTTTACTCTTT TTTAcccataactctTT 16 1854 1854_1 TTACCCATATTTTACTCTT TTAcccatattttactCTT 14 1855 1855_1 TTTACCCATATTTTACTCTT TTtacccatattttacTCTT 14.9 1856 1856_1 ACCCATATTTTACTCTT ACCcatattttactCTT 8.02 1857 1857_1 TACCCATATTTTACTCTT TACccatattttactCTT 16.7 1858 1858_1 TACCCATATTTTACTCT TACccatattttacTCT 22.3 1859 1859_1 TTACCCATATTTTACTCT TTACccatattttactCT 15.2 1860 1860_1 TTTACCCATATTTTACTCT TTTAcccatattttactCT 11.8 1861 1861_1 TTACCCATATTTTACTC TTAcccatattttaCTC 24.4 1862 1862_1 TTTACCCATATTTTACTC TTTacccatattttaCTC 14 1863 1863_1 GTTTACCCATATTTTACTC GTttacccatattttaCTC 12.2 1864 1864_1 GTTTACCCATATTTTACT GTttacccatatttTACT 24.9 1865 1865_1 TGTTTACCCATATTTTAC TGTttacccatatttTAC 13.1 1866 1866_1 GTTTACCCATATTTTAC GTttacccatattTTAC 13.2 1867 1867_1 TGTTTACCCATATTTTA TGTttacccatattTTA 6.69 1868 1868_1 TTCTTGCTTCAACCATC TtcttgcttcaacCATC 13.6 1869 1869_1 GTTACCTCCCTTTATAT GTtacctccctttatAT 60.9 1870 1870_1 GGTTACCTCCCTTTAT GgttacctccctTTAT 39 1871 1871_1 AGGTTACCTCCCTTTA AggttacctcccTTTA 35.4 1872 1872_1 ATGTTCTCTATCTCTATA ATGttctctatctctATA 53.3 1873 1873_1 TATGTTCTCTATCTCTA TAtgttctctatctCTA 73.4 1874 1874_1 AGATCAAACTAAAACCT AGAtcaaactaaaaCCT 88.7 1875 1875_1 TGCCCAATTTCACCCAA TGcccaatttcacccAA 30.3 1876 1876_1 TTTGCCCAATTTCACCC TttgcccaatttcacCC 53.3 1877 1877_1 TTTTGCCCAATTTCACC TTttgcccaatttcaCC 57.8 1878 1878_1 TGTATATCAACAATTCAT TGTatatcaacaattCAT 20.8 1879 1879_1 ACATTTCTTTAAAATTTCCA ACatttctttaaaattTCCA 96.4 1879 1879_2 ACATTTCTTTAAAATTTCCA ACAtttctttaaaatttCCA 96.6 1880 1880_1 CACATTTCTTTAAAATTTCCA CACAtttctttaaaatttcCA 95.5 1879 1879_3 ACATTTCTTTAAAATTTCCA AcatttctttaaaattTCCA 98.1 1879 1879_4 ACATTTCTTTAAAATTTCCA ACATttctttaaaatttcCA 98 1881 1881_1 CCACATTTCTTTAAAATTTCC CcacatttctttaaaatTTCC 90 1882 1882_1 CACATTTCTTTAAAATTTCC CAcatttctttaaaattTCC 94.8 1882 1882_2 CACATTTCTTTAAAATTTCC CAcatttctttaaaatTTCC 89.1 1882 1882_3 CACATTTCTTTAAAATTTCC CACAtttctttaaaatttCC 94.4 1883 1883_1 ACATTTCTTTAAAATTTCC ACAtttctttaaaattTCC 91.9 1882 1882_4 CACATTTCTTTAAAATTTCC CACatttctttaaaattTCC 92.4 1884 1884_1 CCACATTTCTTTAAAATTTC CCACatttctttaaaattTC 98.3 1885 1885_1 ACCACATTTCTTTAAAATTTC ACCAcatttctttaaaattTC 97.5 1884 1884_2 CCACATTTCTTTAAAATTTC CCAcatttctttaaaattTC 102 1884 1884_3 CCACATTTCTTTAAAATTTC CCacatttctttaaaaTTTC 94.9 1884 1884_4 CCACATTTCTTTAAAATTTC CCAcatttctttaaaatTTC 87.2 1886 1886_1 ACCACATTTCTTTAAAATTT ACCAcatttctttaaaatTT 94.8 1887 1887_1 ACAAAACCACATTTCTTTAA ACAaaaccacatttcttTAA 97.4 1888 1888_1 CTGTTTTCAAATCATTTC CTGTtttcaaatcattTC 15.8 1889 1889_1 GAACCATTACTATTATCAA GAaccattactattaTCAA 27.3 1890 1890_1 AGAACCATTACTATTATCA AGAaccattactattaTCA 19.8 1891 1891_1 AGAACCATTACTATTATC AGaaccattactatTATC 17.9 1892 1892_1 CTAGAACCATTACTATTA CTAGaaccattactatTA 35.3 1893 1893_1 TAGAACCATTACTATTA TAGAaccattactatTA 13.2 1894 1894_1 CTAGAACCATTACTATT CTAGaaccattactaTT 32.1 1895 1895_1 AGATTACCATCTTTCAAAA AGATtaccatctttcaaAA 59.5 1895 1895_2 AGATTACCATCTTTCAAAA AGAttaccatctttcaAAA 54.1 1896 1896_1 AGATTACCATCTTTCAAA AGATtaccatctttcaAA 50.6 1896 1896_2 AGATTACCATCTTTCAAA AGattaccatattCAAA 42.3 1897 1897_1 AGATTACCATCTTTCAA AGAttaccatctttCAA 32.4 1898 1898_1 AAGATTACCATCTTTCA AAGAttaccatattCA 47.9 1899 1899_1 CATGCTCACACATTTTAA CATgctcacacatttTAA 60.5 1899 1899_2 CATGCTCACACATTTTAA CAtgctcacacattTTAA 70.3 1899 1899_3 CATGCTCACACATTTTAA CAtgctcacacatttTAA 69.8 1899 1899_4 CATGCTCACACATTTTAA CATGctcacacattttAA 55.9 1900 1900_1 CTTAAGCTATCTAAACA CTTAagctatctaaaCA 82.6 1901 1901_1 TGAACAATTCAACATTCA TGAacaattcaacatTCA 67.7 1902 1902_1 GATCAAAAAACTTTCCCT GAtcaaaaaactttCCCT 76.1 1903 1903_1 AGATCAAAAAACTTTCCCT AGatcaaaaaactttCCCT 70.4 1904 1904_1 AGATCAAAAAACTTTCCC AGAtcaaaaaactaCCC 73.6 1905 1905_1 TCCTAGATCAAAAAACT TCCTagatcaaaaaaCT 69.9 1906 1906_1 ATTTTTTCTTCTCTTTTCA ATTTtttcttctcttttCA 8.98 1907 1907_1 TATTTTTTCTTCTCTTTTCA TATtttttcttctcttttCA 63.8 1908 1908_1 ATATTTTTTCTTCTCTTTTC ATattttttcttctctTTTC 16.1 1909 1909_1 TCTGCTTTAAAAACTCTC TCtgctttaaaaacTCTC 34.3 1910 1910_1 CTCTGCTTTAAAAACTC CTCtgctttaaaaaCTC 51.6 1911 1911_1 ACTACACAAACACATTCAA ACtacacaaacacatTCAA 37.6 1912 1912_1 CAAACTACACAAACACATTC CAaactacacaaacacaTTC 41.2 A A 1913 1913_1 ACAAACTACACAAACACATT ACAaactacacaaacacaTT 63.1 C C 1914 1914_1 CAACAAACTACACAAACACA CAAcaaactacacaaacaCA 86.1 T T 1915 1915_1 CACAACAAACTACACAAACA CACaacaaactacacaaaCA 62.1 C C 1916 1916_1 TCACAACAAACTACACAAAC TCACaacaaactacacaaaC 48.6 A A 1917 1917_1 TTCACAACAAACTACACAAA TTCAcaacaaactacacaaA 58.8 C C 1918 1918_1 ATTTCACAACAAACTACACA ATTtcacaacaaactacaCA 76.8 A A 1919 1919_1 CAATTTCACAACAAACTACA CAAtttcacaacaaactaCAC 70.7 C 1920 1920_1 TGTAACAATTTCACAACAA TGTaacaatttcacaaCAA 59.5 1921 1921_1 TGTAACAATTTCACAACA TGTAacaatttcacaaCA 28.7 1922 1922_1 TTAAGCCAACCCCACCA TtaagccaaccccacCA 83.1 1923 1923_1 TTTAAGCCAACCCCACC TttaagccaaccccACC 69.2 1924 1924_1 ATTTAAGCCAACCCCAC AtttaagccaaccCCAC 60.6 1925 1925_1 CCAGTAATACAAATTATA CCAGtaatacaaattaTA 69.5 1926 1926_1 CCCAGTAATACAAATTA CCCAgtaatacaaatTA 55.9 1927 1927_1 TCCCAGTAATACAAATT TCCCagtaatacaaaTT 64.9 1928 1928_1 ATCCCAGTAATACAAAT ATCCcagtaatacaaAT 65.9 1929 1929_1 CTACTAGCATCACCACT CtactagcatcacCACT 19.8 1930 1930_1 TTCTACTAGCATCACC TtctactagcatCACC 21.8 1931 1931_1 CTTCTACTAGCATCAC CTtctactagcaTCAC 33.2 1932 1932_1 TAAATTACTCATTAAATCCAT TAaattactcattaaatCCAT 77.8 1933 1933_1 ATAAATTACTCATTAAATCCA ATaaattactcattaaaTCCA 52.4 1934 1934_1 TAAATTACTCATTAAATCCA TAaattactcattaaaTCCA 51.6 1935 1935_1 CATAAATTACTCATTAAATCC CATaaattactcattaaaTCC 58.5 1935 1935_2 CATAAATTACTCATTAAATCC CATaaattacTcattaaaTCC 22.3 1936 1936_1 GATTTATTTTTCTACTTA GAtttatttttctaCTTA 66 1937 1937_1 ATACAACAAACAATTCACTTT ATacaacaaacaattcaCTTT 53.2 1937 1937_2 ATACAACAAACAATTCACTTT ATACaacaaacaattcactTT 48.1 1938 1938_1 CGATACAACAAACAATTCA CGATacaacaaacaattCA 23 1939 1939_1 GAACATCCACACTAACAACA GAACatccacactaacaaCA 43.6 1940 1940_1 ACATCCACACTAACAACA ACAtccacactaacaACA 65 1939 1939_2 GAACATCCACACTAACAACA GAAcatccacactaacaACA 52 1939 1939_3 GAACATCCACACTAACAACA GAacatccacactaacAACA 58.1 1941 1941_1 GAACATCCACACTAACAAC GAACatccacactaacaAC 51.3 1941 1941_2 GAACATCCACACTAACAAC GAacatccacactaaCAAC 63.3 1942 1942_1 TGAACATCCACACTAACAA TGAacatccacactaaCAA 57.8 1943 1943_1 TTGAACATCCACACTAACA TTGAacatccacactaaCA 60.3 1944 1944_1 TGAACATCCACACTAACA TGAAcatccacactaaCA 42.6 1945 1945_1 CATTGAACATCCACACTA CATtgaacatccacaCTA 59.4 1946 1946_1 ATTGAACATCCACACTA ATTgaacatccacaCTA 50 1947 1947_1 CATTGAACATCCACACT CAttgaacatccaCACT 43 1948 1948_1 ACTCATTGAACATCCAC ACtcattgaacatCCAC 46.8 1949 1949_1 TATCTTTATTTAATAATCTT TATCtttatttaataatcTT 93.4 1949 1949_2 TATCTTTATTTAATAATCTT TAtctttatttaataaTCTT 96.9 1950 1950_1 TCTCAAGCTTCACTCTA TCtcaagcttcactcTA 78.6 1951 1951_1 GACAATATATTCCTCAATC GACAatatattcctcaaTC 73 1952 1952_1 GACAATATATTCCTCAAT GACAatatattcctcaAT 82 1952 1952_2 GACAATATATTCCTCAAT GAcaatatattcctCAAT 76.8 1953 1953_1 TCCTGTAACAATTATAC TCCtgtaacaattaTAC 95.4 1954 1954_1 ACCCAGAATAAAAACCAC ACccagaataaaaaCCAC 95.5 1955 1955_1 TTCCACTTTCTTACTCCC TtccactttcttactcCC 96.6 1956 1956_1 TTCCACTTTCTTACTCC TtccactttcttacTCC 86.3 1957 1957_1 TTTCCACTTTCTTACTCC TttccactttcttacTCC 89.2 1958 1958_1 TTTCCACTTTCTTACTC TTTCcactttcttacTC 89.2 1959 1959_1 ATCCCTTTACCACTTTT ATCcctttaccactTTT 101 1960 1960_1 CATCCCTTTACCACTTTT CAtccctttaccactTTT 98 1961 1961_1 TCATCCCTTTACCACTTT TCatccctttaccactTT 101 1962 1962_1 TCATCCCTTTACCACTT TCAtccctttaccacTT 96.9 1963 1963_1 CTCATCCCTTTACCACTT CtcatccctttaccacTT 97.7 1964 1964_1 GTCTACATCTAACCCC GtctacatctaacCCC 97 1965 1965_1 AGTCTACATCTAACCCC AGtctacatctaaccCC 99.6 1966 1966_1 CAGTCTACATCTAACCCC CagtctacatctaaccCC 97.4 1967 1967_1 CAGTCTACATCTAACCC CagtctacatctaaCCC 99.5 1968 1968_1 TCAGTCTACATCTAACCC TCagtctacatctaacCC 98.9 1969 1969_1 AGTCTACATCTAACCC AGTctacatctaacCC 98.2 1970 1970_1 TCAGTCTACATCTAACC TCagtctacatctAACC 98.3 1971 1971_1 TTCAGTCTACATCTAACC TTCagtctacatctaaCC 98 1972 1972_1 TTCAGTCTACATCTAAC TTCAgtctacatctaAC 98.7 1973 1973_1 TTTCAGTCTACATCTAA TTtcagtctacatCTAA 90.1 1974 1974_1 AGTTTTAACCACACCTCCT AgttttaaccacacctcCT 102 1975 1975_1 GTTTTAACCACACCTCC GTTttaaccacacctCC 93.7 1976 1976_1 AGTTTTAACCACACCTCC AgttttaaccacaccTCC 95 1977 1977_1 AGTTTTAACCACACCTC AGttttaaccacacCTC 88.7 1978 1978_1 GAGTTTTAACCACACC GAGttttaaccacACC 94.7 1979 1979_1 CAGATCTTCTCTTTATTT CAGatcttctctttaTTT 96.3 1980 1980_1 TGTTTTCAACAAAACATCA TGTtttcaacaaaacaTCA 89.9 1981 1981_1 TGTTTTCAACAAAACATC TGttacaacaaaaCATC 97.5 1982 1982_1 CTGTTTTCAACAAAACAT CTGttttcaacaaaaCAT 102 1983 1983_1 TCTGTTTTCAACAAAACA TCTGttacaacaaaaCA 98 1984 1984_1 ATCTTTCTAAAACTTACC ATCTttctaaaacttaCC 96.3 1985 1985_1 CAGAATCTTTCTAAAACT CAGAatctttctaaaaCT 91.7 1986 1986_1 CTACAGAATCTTTCTAA CTacagaatctttCTAA 97.6 1986 1986_2 CTACAGAATCTTTCTAA CTAcagaatctttcTAA 95.6 1987 1987_1 ATTTCCCTTTATTTCCCTT AtttccctttatttccCTT 92 1988 1988_1 GTATTTCCCTTTATTTCC GtatttccctttattTCC 99.5 In the oligonucleotide compound column, capital letters represent beta-D-oxy LNA nucleosides, LNA cytosines are 5-methyl cytosine, lower case letters are DNA nucleosides, and all internucleoside linkages are phosphorothioate. ^(m)c represent 5-methyl cytosine DNA nucleosides (used in compounds 1490_1 and 14911).

Example 4 Materials and Methods:

The screening assay described in Example 2 was performed using a series of further oligonucleotide targeting human ATXN3 pre-mRNA using the qpCR: (ATXN3_exon_8-9(1) PrimeTime® XL qPCR Assay (IDT).

qPCR probe and primers set 2: Probe: (SEQ ID NO: 1134) 5′-/56-FAM/CTCCGCAGG/ZEN/GCT ATTCAGCT AAGT/ 3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1135) 5′-AGT AAGATTTGT ACCTGATGTCTGT-3′ Primer 2: (SEQ ID NO: 1136) 5′-CATGGAAGATGAGGAAGCAGAT-3′

Results:

TABLE 6 % of ATXN3 Oligonucleotide Base  Oligonucleotide mRNA SEQID CMPID Sequence compound remaining 1110 1110_2 ACATCATTTATCACTACCAC ACatcatttatcactacCAC 44 1102 1102_2 TATCTCAAACTATCCCCA TatctcaaactatccCCA 74 1104 1104_2 TCCCCTAAATAATTTAATCA TCCcctaaataatttaaTCA 78 1116 1116_2 TCTTCATTATACCATCAAAT TCTTcattataccatcaaAT 12 1121 1121_2 CTCTCAACTTCTACTACTAA CtctcaacttctactaCTAA 68 1114 1114_2 TGATTCTTATACTTACTA TGATtcttatacttacTA 64 1120 1120_2 CATCACAAAATAACCTATCA CATCacaaaataacctatCA 38 1100 1100_2 CCCCATTCAAATATTTATT CCCcattcaaatatttATT 79 1112 1112_2 TCAGATCCTAAAATCACT TCAGatcctaaaatcaCT 65 1123 1123_2 CCAAAATTACTTCTTTTATC CCaaaattacttctttTATC 37 1117 1117_2 GTTTCATATTTTTAATCC GTttcatatttttaATCC 10 1099 1099_2 CCAAAAGAAACCAAACCC CCaaaagaaaccaaACCC 88 1109 1109_2 TGAAACCATTACTACAACC TGAaaccattactacaACC 22 1113 1113_2 CTATACCTAAAACAATCTA CTatacctaaaacaaTCTA 86 1119 1119_2 CAAATATTCACAAATCCTA CaaatattcacaaatCCTA 78 1125 1125_2 ACAATATATTCCTCAATCA ACaatatattcctcaATCA 74 1127 1127_2 CATCCCTTTACCACTTT CatccctttaccaCTTT 97 1118 1118_2 TAATATCCTCATTACCCATT TaatatcctcattaccCATT 97 1103 1103_2 TCTATTCCTTAACCCAAC TCtattccttaaccCAAC 81 1122 1122_2 AATCTTATTTACATCTTCC AATCttatttacatcttCC 11 1126 1126_2 CCTGTAACAATTATACA CCTGtaacaattataCA 93 1122 1122_3 AATCTTATTTACATCTTCC AatcttatttacaTCtTCC 54 1122 1122_4 AATCTTATTTACATCTTCC AAtcTtatttacAtCttCC 17 1122 1122_5 AATCTTATTTACATCTTCC AAtcttatttacAtCttCC 21 1122 1122_6 AATCTTATTTACATCTTCC AatctTatttacaTCttCC 12 1122 1122_7 AATCTTATTTACATCTTCC AatcttatttacAtCttCC 28 1122 1122_8 AATCTTATTTACATCTTCC AAtcttatttacAtcTTCC 28 1122 1122_9 AATCTTATTTACATCTTCC AAtcTtatttacAtctTCC 11 1122 1122_10 AATCTTATTTACATCTTCC AatctTatttacAtctTCC 9 1122 1122_11 AATCTTATTTACATCTTCC AatcTtatttacatcTTCC 10 1122 1122_12 AATCTTATTTACATCTTCC AATcTtatttacAtcTtCC 10 1122 1122_13 AATCTTATTTACATCTTCC AatCTtatttacAtcttCC 10 1122 1122_14 AATCTTATTTACATCTTCC AatCttatttacatctTCC 7 1122 1122_15 AATCTTATTTACATCTTCC AatcttatttacaTCttCC 32 1122 1122_16 AATCTTATTTACATCTTCC AatCttatttacatcTTCC 4 1122 1122_17 AATCTTATTTACATCTTCC AAtCttatttacatcTtCC 5 1122 1122_18 AATCTTATTTACATCTTCC AaTcTtatttacaTcTtCC 9 1122 1122_19 AATCTTATTTACATCTTCC AatcTTatttacatcTtCC 5 1122 1122_20 AATCTTATTTACATCTTCC AatcTtatttacatCttCC 13 1122 1122_21 AATCTTATTTACATCTTCC AAtcttatttacatCttCC 23 1122 1122_22 AATCTTATTTACATCTTCC AatctTatttacatCttCC 8 1122 1122_23 AATCTTATTTACATCTTCC AatcTTatttacatCttCC 4 1122 1122_24 AATCTTATTTACATCTTCC AatctTatttacatcTTCC 8 1122 1122_25 AATCTTATTTACATCTTCC AATcTTatttacatcTtCC 5 1122 1122_26 AATCTTATTTACATCTTCC AAtctTatttacatcTtCC 12 1122 1122_27 AATCTTATTTACATCTTCC AaTCTtatttacatcTtCC 3 1122 1122_28 AATCTTATTTACATCTTCC AaTcTTatttacatcTtCC 3 1122 1122_29 AATCTTATTTACATCTTCC AatCTTatttacatcTtCC 3 1122 1122_30 AATCTTATTTACATCTTCC AAtcTTatttacatctTCC 5 1122 1122_31 AATCTTATTTACATCTTCC AAtcTtatttacatctTCC 12 1122 1122_32 AATCTTATTTACATCTTCC AAtcttatttacatctTCC 33 1122 1122_33 AATCTTATTTACATCTTCC AatCtTatttacatctTCC 3 1122 1122_34 AATCTTATTTACATCTTCC AatcTTatttacatctTCC 6 1122 1122_35 AATCTTATTTACATCTTCC AatcTtatttacatctTCC 16 1122 1122_36 AATCTTATTTACATCTTCC AATCtTatttacatcttCC 8 1122 1122_37 AATCTTATTTACATCTTCC AAtCTTatttacatcttCC 5 1122 1122_38 AATCTTATTTACATCTTCC AAtCttatttacatcttCC 16 1122 1122_39 AATCTTATTTACATCTTCC AaTCTtatttacatcttCC 7 1122 1122_40 AATCTTATTTACATCTTCC AaTCtTatttacatcttCC 5 1122 1122_41 AATCTTATTTACATCTTCC AatCTTatttacatcttCC 5 1122 1122_42 AATCTTATTTACATCTTCC AatCTtatttacatcttCC 13 1122 1122_43 AATCTTATTTACATCTTCC AatcTTatttacatcttCC 17 1109 1109_3 TGAAACCATTACTACAACC TgaaaccattacTAcaaCC 58 1109 1109_4 TGAAACCATTACTACAACC TgaaaccattacTAcAaCC 20 1109 1109_5 TGAAACCATTACTACAACC TgaAAccattacTacAaCC 23 1109 1109_6 TGAAACCATTACTACAACC TgAaAccattactAcaaCC 50 1109 1109_7 TGAAACCATTACTACAACC TgAaaCcattactAcaaCC 46 1109 1109_8 TGAAACCATTACTACAACC TgaAAccattacTacaaCC 48 1109 1109_9 TGAAACCATTACTACAACC TgaaaccattactaCAaCC 25 1109 1109_10 TGAAACCATTACTACAACC TgaaAccattacTaCaACC 24 1109 1109_11 TGAAACCATTACTACAACC TGaaAccattactaCaaCC 36 1109 1109_12 TGAAACCATTACTACAACC TgAAAccattactaCaaCC 20 1109 1109_13 TGAAACCATTACTACAACC TgAAaCcattactaCaaCC 26 1109 1109_14 TGAAACCATTACTACAACC TgAaaccattactaCaaCC 27 1109 1109_15 TGAAACCATTACTACAACC TGaAaccattacTacAaCC 14 1109 1109_16 TGAAACCATTACTACAACC TgAaaCcattactacAACC 12 1109 1109_17 TGAAACCATTACTACAACC TgaaaCcattacTacAaCC 36 1109 1109_18 TGAAACCATTACTACAACC TgaaaCcattacTacaaCC 62 1109 1109_19 TGAAACCATTACTACAACC TGaaAccattactacaaCC 47 1109 1109_20 TGAAACCATTACTACAACC TgaAaccattactaCAaCC 19 1109 1109_21 TGAAACCATTACTACAACC TgaAaccattactACaACC 16 1109 1109_22 TGAAACCATTACTACAACC TgAAaccattactACaACC 9 1109 1109_23 TGAAACCATTACTACAACC TgAaAccattactAcaACC 29 1109 1109_24 TGAAACCATTACTACAACC TgaaaCcattactAcaACC 41 1109 1109_25 TGAAACCATTACTACAACC TgaAACcattactAcaaCC 34 1109 1109_26 TGAAACCATTACTACAACC TgaAaCcattactaCaaCC 28 1109 1109_27 TGAAACCATTACTACAACC TGaAaCcattactacAACC 10 1109 1109_28 TGAAACCATTACTACAACC TgAAaCcattactAcAACC 52 1109 1109_29 TGAAACCATTACTACAACC TGaAAccattactacaACC 16 1109 1109_30 TGAAACCATTACTACAACC TGAaaccattactacaaCC 36 1109 1109_31 TGAAACCATTACTACAACC TgaaaCcattactaCaACC 21 1109 1109_32 TGAAACCATTACTACAACC TgAAAccattactacAACC 9 1109 1109_33 TGAAACCATTACTACAACC TgAaaCcattactacAaCC 14 1109 1109_34 TGAAACCATTACTACAACC TGaaaccattactacaACC 43 1109 1109_35 TGAAACCATTACTACAACC TgAAaCcattactacaACC 15 1109 1109_36 TGAAACCATTACTACAACC TgaAACcattactacaaCC 15 1109 1109_37 TGAAACCATTACTACAACC TGaAaCcattactacaaCC 16 1109 1109_38 TGAAACCATTACTACAACC TGaaaCcattactacaaCC 38 1109 1109_39 TGAAACCATTACTACAACC TgAAACcattactacaaCC 14 1109 1109_40 TGAAACCATTACTACAACC TgAAaCcattactacaaCC 16 1109 1109_41 TGAAACCATTACTACAACC TgaAaCcattactacaaCC 28 1109 1109_42 TGAAACCATTACTACAACC TgaaACcattactacaaCC 28 1122 1122_44 AATCTTATTTACATCTTCC AatcttatttacaTCTtCC 65 1122 1122_45 AATCTTATTTACATCTTCC AatcTtatttacAtCttCC 38 1122 1122_46 AATCTTATTTACATCTTCC AatcTtatttacaTcTTCC 34 1122 1122_47 AATCTTATTTACATCTTCC AAtCttatttacAtcTtCC 10 1122 1122_48 AATCTTATTTACATCTTCC AAtcTtatttacATcTtCC 35 1122 1122_49 AATCTTATTTACATCTTCC AatCttatttacAtcTtCC 10 1122 1122_50 AATCTTATTTACATCTTCC AAtCttatttacAtcttCC 11 1122 1122_51 AATCTTATTTACATCTTCC AAtctTatttacatCTtCC 9 1122 1122_52 AATCTTATTTACATCTTCC AatcTTatttacAtcTtCC 12 1122 1122_53 AATCTTATTTACATCTTCC AatctTatttacatCTtCC 8 1122 1122_54 AATCTTATTTACATCTTCC AaTcTtatttacatcTTCC 4 1122 1122_55 AATCTTATTTACATCTTCC AAtcttatttacAtcTtCC 27 1122 1122_56 AATCTTATTTACATCTTCC AAtCtTatttacAtcttCC 5 1122 1122_57 AATCTTATTTACATCTTCC AAtcTTatttacatcttCC 14 1122 1122_58 AATCTTATTTACATCTTCC AaTCttatttacatcttCC 13 1122 1122_59 AATCTTATTTACATCTTCC AATcttatttacatCttCC 6 1122 1122_60 AATCTTATTTACATCTTCC AAtcTtatttacatCttCC 10 1122 1122_61 AATCTTATTTACATCTTCC AAtcTTatttacatcTtCC 6 1122 1122_62 AATCTTATTTACATCTTCC AatCtTatttacatcTtCC 3 1122 1122_63 AATCTTATTTACATCTTCC AATCttatttacaTcttCC 5 1122 1122_64 AATCTTATTTACATCTTCC AatCttatttacatcTtCC 7 1122 1122_65 AATCTTATTTACATCTTCC AatCttatttacatcttCC 32 1122 1122_66 AATCTTATTTACATCTTCC AatcttatttacatcTTCC 19 1122 1122_67 AATCTTATTTACATCTTCC AATCttatttacatcTtCC 3 1122 1122_68 AATCTTATTTACATCTTCC AATcTtatttacatcTtCC 4 1122 1122_69 AATCTTATTTACATCTTCC AAtCTtatttacatcTtCC 3 1122 1122_70 AATCTTATTTACATCTTCC AAtCtTatttacatcTtCC 3 1122 1122_71 AATCTTATTTACATCTTCC AAtcTtatttacatcTtCC 13 1122 1122_72 AATCTTATTTACATCTTCC AaTCttatttacatcTtCC 5 1122 1122_73 AATCTTATTTACATCTTCC AatCTtatttacatcTtCC 5 1122 1122_74 AATCTTATTTACATCTTCC AatctTatttacatcTtCC 10 1122 1122_75 AATCTTATTTACATCTTCC AAtCTtatttacatctTCC 3 1122 1122_76 AATCTTATTTACATCTTCC AAtCttatttacatctTCC 5 1122 1122_77 AATCTTATTTACATCTTCC AaTCttatttacatctTCC 5 1122 1122_78 AATCTTATTTACATCTTCC AatCTtatttacatctTCC 4 1122 1122_79 AATCTTATTTACATCTTCC AAtCTtatttacatcttCC 7 1122 1122_80 AATCTTATTTACATCTTCC AAtCtTatttacatcttCC 5 1122 1122_81 AATCTTATTTACATCTTCC AatCtTatttacatcttCC 8 1109 1109_43 TGAAACCATTACTACAACC TgAAaccattacTAcAaCC 18 1109 1109_44 TGAAACCATTACTACAACC TgAaAccattacTacAaCC 27 1109 1109_45 TGAAACCATTACTACAACC TgaAaCcattacTacAaCC 65 1109 1109_46 TGAAACCATTACTACAACC TgAaaccattacTacaACC 25 1109 1109_47 TGAAACCATTACTACAACC TgaAaccattacTacaACC 35 1109 1109_48 TGAAACCATTACTACAACC TgaaAccattacTacaACC 48 1109 1109_49 TGAAACCATTACTACAACC TgaAaCcattacTacaaCC 44 1109 1109_50 TGAAACCATTACTACAACC TgaAaccattacTaCaaCC 34 1109 1109_51 TGAAACCATTACTACAACC TGaaaccattacTacaACC 29 1109 1109_52 TGAAACCATTACTACAACC TgAAaccattacTacaACC 23 1109 1109_53 TGAAACCATTACTACAACC TgaaaCcattacTaCaaCC 39 1109 1109_54 TGAAACCATTACTACAACC TGaaaccattactaCaaCC 33 1109 1109_55 TGAAACCATTACTACAACC TgAaAccattactaCaaCC 29 1109 1109_56 TGAAACCATTACTACAACC TGaaAccattactacAACC 16 1109 1109_57 TGAAACCATTACTACAACC TGaaAccattactacAaCC 18 1109 1109_58 TGAAACCATTACTACAACC TgAaACcattactacaaCC 12 1109 1109_59 TGAAACCATTACTACAACC TgAaaccattactaCAaCC 13 1109 1109_60 TGAAACCATTACTACAACC TgaaAccattactACaaCC 36 1109 1109_61 TGAAACCATTACTACAACC TGaaaccattactAcaACC 34 1109 1109_62 TGAAACCATTACTACAACC TgAaaCcattactACaaCC 43 1109 1109_63 TGAAACCATTACTACAACC TGaAAccattactaCaaCC 19 1109 1109_64 TGAAACCATTACTACAACC TGaaaCcattactACaaCC 29 1109 1109_65 TGAAACCATTACTACAACC TGaAaccattactAcaaCC 40 1109 1109_66 TGAAACCATTACTACAACC TgaAAccattactAcAACC 14 1109 1109_67 TGAAACCATTACTACAACC TGaAaccattactAcAaCC 14 1109 1109_68 TGAAACCATTACTACAACC TGaaaCcattactAcAaCC 27 1109 1109_69 TGAAACCATTACTACAACC TgAaaCcattactAcAACC 31 1109 1109_70 TGAAACCATTACTACAACC TgAaAccattactAcAaCC 24 1109 1109_71 TGAAACCATTACTACAACC TgaaACcattactacAACC 10 1109 1109_72 TGAAACCATTACTACAACC TGAaaccattactacAaCC 11 1109 1109_73 TGAAACCATTACTACAACC TgaAACcattactAcAaCC 34 1109 1109_74 TGAAACCATTACTACAACC TGaAaCcattactacaACC 15 1109 1109_75 TGAAACCATTACTACAACC TGaaACcattactacaaCC 14 1109 1109_76 TGAAACCATTACTACAACC TGaAaccattactaCaaCC 22 1109 1109_77 TGAAACCATTACTACAACC TgaAAccattactaCaaCC 30 1109 1109_78 TGAAACCATTACTACAACC TgaaAccattactaCaaCC 50 1109 1109_79 TGAAACCATTACTACAACC TgaAACcattactacAaCC 9 1109 1109_80 TGAAACCATTACTACAACC TGaAaccattactacaaCC 31 1109 1109_81 TGAAACCATTACTACAACC TgAaaCcattactacaaCC 31 In the oligonucleotide compound column, capital letters represent beta-D-oxy LNA nucleosides, LNA cytosines are 5-methyl cytosine, lower case letters are DNA nucleosides, and all internucleoside linkages are phosphorothioate.

Example 5: Testing In Vitro Efficacy of LNA Oligonucleotides in iCell® GlutaNeurons at 25 μM Materials and Methods:

An oligonucleotide screen was performed in a human cell line using selected LNA oligonucleotides from the previous examples.

The iCell® GlutaNeurons derived from human induced pluripotent stem cell were purchased from the vendor listed in Table 2, and were maintained as recommended by the supplier in a humidified incubator at 37° C. with 5% CO₂. For the screening assays, cells were seeded in 96 multi well plates in media recommended by the supplier (see Table 2 in the Materials and Methods section). The number of cells/well was optimized (Table 2).

Cells were grown for 7 days before addition of the oligonucleotide in concentration of 25 μM (dissolved in medium). 4 days after addition of the oligonucleotide, the cells were harvested.

RNA extraction and qPCR was performed as described for “Example 1”

Primer assays for ATXN3 and house keeping gene were:

ATXN3 primer assay (Assay ID: N/A, Item Name: Hs.PT.58.39355049): Forward primer: (SEQ ID NO: 1128) GTTTCTAAAGACATGGTCACAGC Reverse: (SEQ ID NO: 1129) CTATCAGGACAGAGTTCACATCC Probe: (SEQ ID NO: 1030) 56-FAM/AAAGGCCAG/ZEN/CCACCAGTTCAGG/3IABkFQ/ TBP primer assay (Assay ID: N/A, Item name: Hs.PT.58v.39858774 Probe: (SEQ ID NO: 1131) 5′-/5HEX/TGA TCT TTG/ZEN/CAG TGA CCC AGC ATC A/3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1132) 5′-GCT GTT TAA CTT CGC TTC CG-3′ Primer 2: (SEQ ID NO: 1133) 5′-CAG CAA CTT CCT CAA TTC CTT G-3′

Results:

The relative ATXN3 mRNA expression levels were determined as % of control (medium-treated cells) i.e. the lower the value the larger the inhibition.

The compounds tested and the target knock-down data is presented in Table 7.

Example 6: Determination of EC50 Values of LNA Gapmers Targeting ATXN3 Materials and Methods:

Values for EC50 (concentration at which half effect on target knockdown is observed) was determined for the cell lines SK-N-AS, A431 and iPSCs (iCell® GlutaNeurons). The following oligoconcentrations were used:

-   -   SK—N-AS: 50 μM—half log dilution (3.16 fold)—8 steps including         blank control     -   A431: 50 μM—half log dilution (3.16 fold)—8 steps including         blank control     -   iPCS: 10 μM—10 fold dilution—8 steps including blank control

The cells were treated with oligo, lysed and analysed as indicated in previous examples.

Results:

The compounds tested and their EC50 values is shown in table 7.

Example 7: In Vitro Toxicity Evaluation Materials and Methods:

The criterion for selection of oligonucleotides assessed in the various safety assays is based on the magnitude and frequency of signals obtained. Safety assays used were: Caspase activation, hepatotoxicity, nephrotoxicity toxicity and immunotoxicity assays. The signals obtained in the individual in vitro safety assays result in a score (0-safe, 0.5 borderline toxicity, 1—mild toxicity, 2—medium toxicity and 3—severe toxicity) and are summarized into a cumulative score for each sequence (See table 7), providing an objective ranking of compounds. As reported in the references provided, the signal strength is a measure of risk for in vivo toxicity based on validation of the assays using in vivo relevant reference molecules

In vitro toxicity assays were performed as described in the following references:

-   Caspase activation assay: Dieckmann et al., Molecular Therapy:     Nucleic Acids Vol. 10 Mar. 2018, pp 45-54. -   Hepatotoxicity toxicity assay: Sewing et al., Methods in Molecular     Biology Oligonucleotide-Based Therapies MIMB, volume 2036, pp     249-259 2019, Sewing et al., PLOS ONE     DOI:10.1371/journal.pone.0159431 Jul. 21, 2016. -   Nephrotoxicity toxicity assay: Moisan et al., Mol Ther Nucleic     Acids. 2017 Mar. 17; 6:89-105. doi: 10.1016/j.omtn.2016.11.006. Epub     2016 Dec. 10. -   Immunotoxicity: Sewing et al., PLoS One. 2017 Nov. 6;     12(11):e0187574. doi: 10.1371/journal.pone.0187574. eCollection     2017.

As part of the screening cascade 1170 compounds were evaluated in the cell lines SK-N-AS and A431 where compound efficacy was evaluated (Tables 4-6). Of these, 50 of the most effective compounds were evaluated for caspase activation of which 18 underwent further evaluation in the described in the three other in vitro tox assays (cumulative score is shown in Table 7).

Results:

Conclusively, 8 compounds were identified as being highly effective and potent in vitro, and with a low or absent toxicity in the 4 in vitro assays—these compounds were therefore selected for evaluated in transgenic mice expressing human ATNX3 pre-mRNA: Compounds #18561, 1813_1, 1812_1, 1809_2, 1607_1, 1122_62, 1122_67 and 1122_33.

TABLE 7 Data obtained from examples 5, 6 & 7 HiPCS, Maximal Total SK-N-AS A-431 HiPSC efficacy at 25 μM tox EC50 EC50 EC50 (% remaining CMPID score (μM) (μM) (μM) ATXN3 transcript) 1856_1 1.5 0.53 0.22 0.23 2.87 1806_2 2   0.35 0.19 0.03 0.91 1888_1 — 0.72 0.54 — 1813_1 2   0.24 0.08 0.04 1.85 1640_1 — 1.50 0.19 — 1812_1 1.5 0.20 0.09 0.09 0.59 1117_2 — 0.73 0.57 — 1810_1 — 0.36 0.14 — 1809_2  1.25 0.22 0.09 0.05 1.44 1489_1 — 1.16 0.30 — 1867_1 — 0.54 0.50 — 1893_1 — 0.95 0.34 0.41 4 1906_1 — 0.36 0.57 0.04 2.55 1214_1 — 1.05 0.38 — 1213_1 — 1.01 0.38 — 1423_1 — 0.75 0.23 0.03 3.58 1790_1 — 0.42 0.47 — 1605_1 — 0.47 0.17 — 1607_1 2.5 0.32 0.25 0.08 4.46 1805_1 — 0.75 0.23 — 1806_1 — 0.45 0.20 0.04 1.3 1809_1 3   0.24 0.20 0.02 1.81 1808_1 2   0.26 0.22 0.06 1.4 1625_1 0.5 0.94 0.25 0.66 7.16 1122_54 — 0.62 0.15 — 1122_16 — 0.30 0.15 — 1122_17 — 0.33 0.17 0.11 1.07 1122_62 0.5 0.21 0.10 0.03 3.53 1122_19 — 0.28 0.24 — 1122_23 — 0.54 0.18 0.05 0.59 1122_67 0   0.29 0.10 0.01 0.52 1122_68 — 0.28 0.13 0.01 1122_69 — 0.27 0.12 — 1122_70 — 0.20 0.10 — 1122_27 1   0.23 0.12 0.03 0.55 1122_72 0.5 0.25 0.15 0.06 2.28 1122_28 1   0.20 0.12 0.01 0.37 1122_29 — 0.19 0.09 0.02 1.6 1122_73 — 0.29 0.18 0.04 1.59 1122_75 1   0.44 0.12 0.03 2 1122_76 — 0.33 0.19 — 1122_77 1   0.30 0.20 0.04 1.97 1122_78 — 0.29 0.18 0.02 1.91 1122_33  1.25 0.18 0.10 0.02 1.84 1122_37 — 0.25 0.13 0.03 0.89 1122_80 — 0.33 0.17 — 1122_41 — 0.24 0.16 0.01 0.47 1109_22 — 0.90 0.23 0.11 8.41 1109_32 0   0.75 0.17 0.09 3.49 1109_79 — 1.48 0.20 —

Example 8: In Vivo Transgenic Mouse Study Materials and Methods:

Animal Care

In vivo activity and tolerability of the compounds were tested in 10-13 week old B6;CBA-Tg(ATXN3*)84.2Cce/IbezJ male and female mice (JAX® Mice, The Jackson Laboratory) housed 3-5 per cage. The mice are transgenic mice which express the human ATXN3 pre-mRNA sequence, with 84 CAG repeats motif, an allele which is associated with MJD in humans). Animals were held in colony rooms maintained at constant temperature (22±2° C.) and humidity (40+80%) and illuminated for 12 hours per day (lights on at 0600 hours). All animals had ad libitum access to food and water throughout the studies. All procedures are performed in accordance with the respective Swiss regulations and approved by the Cantonal Ethical Committee for Animal Research.

Administration Route —Cisterna Magna Injections.

The compounds were administered to mice by intra cisterna magna (ICM) injections. Prior to ICM injection the animals received 0.05 mg/kg Buprenorphine dosed sc as analgesia. For the ICM injection animals were placed in isofluran. Intracerebroventricular injections were performed using a Hamilton micro syringe with a FEP catheter fitted with a 36 gauge needle. The skin was incised, muscles retracted and the atlanto-occipital membrane exposed. Intracerebroventricular injections were performed using a Hamilton micro syringe with a catheter fitted with a 36 gauge needle. The 4 microliter bolus of test compound or vehicle was injected over 30 seconds. Muscles were repositioned and skin closed with 2-3 sutures. Animals were placed in a varm environment until they recovered from the procedure.

Two independent experiments were performed with groups of different compounds as shown in Table 8A.

TABLE 8A Compound ID Dose, μg Time-point Group Size Saline only 0 4 wk 6 1856_1 250 4 wk 8 1813_1 250 4 wk 8 1812_1 250 4 wk 8 1809_2 250 4 wk 8 1607_1 250 4 wk 8 1122_62 250 4 wk 8 1122_67 250 4 wk 8 1122_33 250 4 wk 8

Tolerability Results:

All compounds were found to be tolerated up to the 4 weeks timepoint. Acute toxicity was measured by monitoring the animal's behavior as described in WO2016/126995 (see example 9). Sub-acute toxicity was measured by monitoring the body weight of each animal during the time course of the experiment, with >5% weight reduction indicative of sub-acute toxicity. In some groups 1 or 2 animals did show some distress after the ICM administration and were euthanized, but this was likely to be due to the procedure rather than a adverse toxicity of any of the compounds. All eight compounds were therefore considered to be well tolerated in vivo.

4 weeks post administration, the animals were sacrificed, and tissues from the cortex, midbrain, cerebellum, hippocampus pons/medulla and striatum were collected weighed and snap frozen in liquid N2 directly after sampling. Samples were stored on dry ice until storage at −80° C.

Analysis of In Vivo Samples. Description of Tissue Preparation for Content Measurement and qPCR.

Mouse tissue samples were homogenized in the MagNA Pure LC RNA Isolation Tissue Lysis Buffer (Roche, Indianapolis, Ind.) using a Qiagen TissueLyzer II. The homogenates were incubated for 30 minutes at room temperature for complete lysis. After lysis the homogenates were centrifuged for 3 minutes at 13000 rpm and the supernatant used for analysis. Half was set aside for bioanalysis and for the other half, RNA extraction was continued directly.

Oligo Content Analysis

For bioanalysis, the samples were diluted 10-50 fold for oligo content measurements with a hybridization ELISA method. A biotinylated LNA-capture probe and a digoxigenin-conjugated LNA-detection probe (both 35 nM in 5×SSCT, each complementary to one end of the LNA oligonucleotide to be detected) was mixed with the diluted homogenates or relevant standards, incubated for 30 minutes at RT and then added to a streptavidine-coated ELISA plates (Nunc cat. no. 436014).

The plates were incubated for 1 hour at RT, washed in 2×SSCT (300 mM sodium chloride, 30 mM sodium citrate and 0,05% v/v Tween-20, pH 7.0) The captured LNA duplexes were detected using an anti-DIG antibodies conjugated with alkaline phosphatase (Roche Applied Science cat. No. 11093274910) and an alkaline phosphatase substrate system (Blue Phos substrate, KPL product code 50-88-00). The amount of oligo complexes was measured as absorbance at 615 nm on a Biotek reader.

Data was normalized to the tissue weight and expressed as nM of oligo.

mRNA Analysis

RNA was purified from 350 μL of supernatant using the MagNA Pure 96 instrument using the kit Cellular RNA Large Volume Kit (Roche, Indianapolis, Ind.). RNA samples were normalized to 2 ng/μL in RNase-Free water and stored at −20° C. until further use.

For one-step qPCR (cDNA synthesis and qPCR), each sample was run in duplicates with four probe sets (IDT, Leuven, Belgium) run in duplex.

To each reaction 4 μL of previously diluted RNA, 0.5 μL of water and 5.5 μL of TaqMan MasterMix was added. Plates were centrifuged and heat-chocked at 90° C. for 40sek followed by a short incubation on ice before analyzing the samples using qPCR (Incubation at 50° C. for 15 minutes and 90° C. for 3 minutes followed by 40 cycles at 95° C. for 5 sec and 60° C. for 45 sec). Assay probes are described below.

Data was analyzed using the relative standard curve method where each is first normalized to the housekeeping gene (RPL4) and then expressed as percent of untreated control animals.

qPCR Assays for In Vivo Studies:

Human ATXN3, qPR assay: (ATXN3_exon_8-9(1) PrimeTime ® XL qPCR Assay (IDT). qPCR probe and primers: Probe: (SEQ ID NO: 1134) 5′-/56-FAM/CTCCGCAGG/ZEN/GC ATTCAGCT AAGT/3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1135) 5′-AGT AAGATTTGT ACCTGATGTCTGT-3′ Primer 2: (SEQ ID NO: 1136) 5′-CATGGAAGATGAGGAAGCAGAT-3′

House Keeping Gene Used:

Mouse RPL4, qPCR assay (Mm.PT.58.17609218) PrimeTime ® XL qPCR Assay (IDT). qPCR probe and primers: Probe: (SEQ ID NO: 1090) 5′-/5HEX/CTG AAC AGC/ZEN/CTC CTT GGT CTT CTT GTA/3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1091) 5′-CTT GCC AGC TCT CAT TCT CTG-3′ Primer 2: (SEQ ID NO: 1092) 5′-TGG TGG TTG AAG ATA AGG TTG A-3′

Results:

The results are shown in Table 8B.

All compounds tested gave efficacious target inhibition in the tissues tested and were tolerated at the doses tested. Compound 1122_33 across the compounds tested has either the best or second ranked highest specific activity (lower EC50) in all tissues, followed by 1122_62 and 1122_67.

Compounds 1122_67, 1607_1, 1813_1 and 1122_33 provided high efficacy in vivo in all tissues tested, illustrating a remarkable consistent inhibition of ATXN3 expression across the brain tissues tested. Based on an accumulative rank score compound 1122_67 was consistently either the best or second ranked compound in terms of efficacy of ATXN3 knock down in the tissues tested.

Example 9: Testing In Vitro Efficacy of LNA Oligonucleotides and Reference Compounds in a Time Course, Dose Range Experiment in Human iPSC-Derived Neurons

Materials and Methods:

Compounds used: 1122_67 and 1813_1 & the following reference compounds disclosed in WO2019/217708, as referenced by the Compound ID numbers used in WO2019/217708: 1100673, 1101657, 1102130, 1103014 & 1102987. Compounds 1100673, 1101657, 1102130 are highlighted in WO2019/217708 as providing potent in vivo inhibition, compounds 1103014 and 1102987 were not evaluated in vivo in WO2019/217708, but are included as reference compounds due to the sequence similarity to compound 1122_67 (1103014) and 1813_1 (1102987).

The iCell® GlutaNeurons cells were prepared and maintained as described in Example 5 & Table 2. Cells were grown for 7 days before addition of the oligonucleotide in concentration of 0-10 μM (dissolved in medium).

Cells were harvested at 4 days, 6 days, 9 days, 12 days and 20 days after oligo treatment, and RNA extraction and qPCR was performed as described for “Example 1”, using the ATXN3 primar assay described in example 5. The relative ATXN3 mRNA expression levels were determined as % of control (medium-treated cells) i.e. the lower the value the larger the inhibition.

Results:

The results are shown in Table 9.

TABLE 9 EC50 in hiPSC-derived neurons, nM Compound Day 4 Day 6 Day 9 Day 12 Day 20 1122_67 7.2 1.3 1.4 1.1 1.1 1813_1 23 6.3 10 8.9 7.7 1100673 110 27 30 34 44 1101657 515 204 69 90 73 1102130 315 164 390 101 133 1103014 662 64 435 98 369 1102987 944 305 135 391 200 Compounds 1122_67 and 1813_1 were remarkably more potent than the 5 reference compounds, with compound 1122_67 being the most potent compound at all time points and both 1122_67 and 1813_1 gave a remarkably effective and long lasting inhibition of ATXN3 mRNA.

Example 10: Comparative In Vivo Transgenic Mouse Study Materials and Methods:

A further in vivo study was performed at Charles River Laboratories Den Bosch B.V., Groningen, NL, using compound 1122_67 and 1813_1, and reference compound 1100673 (WO2019/217708). The study used male and female B6;CBA-Tg(ATXN3*)84.2Cce/IbezJ mice with the compounds administered via intracisternal (ICM) administration. At two timepoints after compound administration, 1 or 4 weeks, animals were euthanized and terminal plasma samples and tissues were collected.

Animal Care

In vivo activity and tolerability of the compounds were tested in 62 B6;CBA-Tg(ATXN3*)84.2Cce/IbezJ male and female mice (JAX® Mice, The Jackson Laboratory) at the age between 7-10 weeks. Following arrival, animals were housed in groups up to 5 in individually vented cages (IVC, 40×20×16 cm) in a temperature (22±2° C.) and humidity (55±15%) controlled environment on a 12 hour light cycle (07.00-19.00 h). Males and females were kept in separate cages. Standard diet (SDS Diets, RM1 PL) and domestic quality mains water were available ad libitum. If required, animals received soaked chow and/or Royal Canin in addition to Standard diet as part of pamper care. The experiments were conducted in strict accordance with the Guide for the Care and Use of Laboratory Animals (National Research Council 2011) and were in accordance with European Union directive 2010/63 and the Dutch law. The in vivo experiment described was performed at Charles River Laboratories Den Bosch B.V. location Groningen (Groningen, the Netherlands).

Administration Route—Intra-Cisterna Magna Injections.

The compounds were administered to mice by intra cisterna magna (ICM) injections. Mice were anesthetized using isoflurane (2.5-3% and 500 mL/min 02). Before surgery, Finadyne (1 mg/kg, s.c.) was administered for analgesia during surgery and the post-surgical recovery period. A mixture of bupivacaine and epinephrine was applied to the incision site and periost of the skull for local analgesia.

Animals were placed in a stereotaxic frame (Kopf instruments, USA) and an incision made at the back of the head towards the neck. Then, the skin was spread and the coordinates marked prior to drilling a hole in the occipital bone of the skull, where a cannula was placed. Next, the compounds were injected into the cisterna magna (ICM). A volume of 4 μL of the assigned test item was injected over 30 seconds. After injection, the needle and cannula were held in place for 30 seconds to ensure no back flow occurred. The cannula was then retracted, the hole was covered with skin and the incision was closed by sutures.

Animals were placed in a warm environment until recovered from the procedure.

Compound 1122_67 was administered at a single dose of 90, 150 or 250 μg, and compound 1813_1 was administered at a single dose of 150 μg or 250 μg. The reference compound 1100673 was administered at a single dose of 250 μg only.

From three days prior to ICM injections, up to one week after administration, animal's weight was registered daily. Animal's weight was monitored and registered at least twice a week for the rest of the experiment.

At the end of the experiment, on day 8 or 29 (1 or 4 weeks), the animals were euthanized by Euthasol® overdose. Terminal plasma was collected in Li-Hep tubes. Terminal tissues were harvested from the animals and were dissected on a chilled surface. Half of the tissue samples were stored in 2.0 mL Safe-Lock tubes, PCR clean, pre-weighted and precooled. Immediately after collection, samples were weighed and flash frozen in liquid N2 prior to storage at −80° C. The other half was fixed in 4% PFA for 72 hours and subsequently transferred to 70% ethanol awaiting shipment. Tissue dissection and collection was performed, collecting tissue from a range of tissues: Midbrain, Cortex, Striatum, Hippocampus, Cerebellum, Brainstem, and spinal cord (Cervical, Thoracic & Lumbar).

Tolerability Results:

Acute toxicity was measured by monitoring the animal's behavior as described in WO2016/126995 (see example 9). Chronic toxicity was measured by monitoring the body weight of each animal during the time course of the experiment, with >5% weight reduction indicative of chronic toxicity. In some groups 1 or 2 animals did show some distress after the ICM administration and were euthanized, but this was likely to be due to the nature of the surgical procedure rather than a adverse toxicity of any of the compounds.

There were signs of acute toxicity at the 250 μg dose of 1813_1 in 3 mice, leading to early euthanisation of this group of animals. Otherwise all compounds were found to be tolerated up to the 4 weeks timepoint.

After 4 weeks the animals were euthanised and brain and CNS tissue collected: Spinal cord, cortex, striatum, hippocampus, midbrain, brainstem and cerebellum as well as liver and kidney was collected in liquid nitrogen for drug concentration analysis an ATAXN3 mRNA analysis at 1 or 4 weeks following dosing.

Analysis of in vivo samples: Description of tissue preparation for content measurement and qPCR was performed as per Example 8. The EC50 was calculated, and maximum KD achieved recorded—this data is provided in Table 10.

Results:

Compound 1122_67 was the most effective compound in all brain tissues tested and gave an excellent effective knock-down in all brain tissues tested, indicating good bio-distribution to all key tissues (1813_1 was as effective as 1122_67 in spinal cord, brainstem and midbrain). Notably compound 1122_67 gave highly effective knock-down in cerebellum, a tissue which the reference compound 1100673 was notably less effective. A further key observation at the after 4 weeks of treatment is that the efficacy of 1122_67 was even further improved as compared to the 1 week timepoint in all brain tissues. Notably, the efficacy of the reference compound, 1100673 was notably lower at the 4 week stage vs. the 1 week timepoint, particularly in key cerebellum and cortex tissues. The long duration of action and high potency of 1122_67 indicates that this compound should require a less frequent administration in a therapeutic setting.

Example 11: Compound Stability to SVPD Materials and Methods:

3′-exonuclease snake venom phosphodiesterase I (SVP) (Art. No. LS003926, Lot. No. 58H18367) was purchased by Worthington Biochemical Corp. (Lakewood, N.Y., USA). The reaction mix for the 3′-exonuclease snake venom phosphodiesterase I (SVP) assay consisted of 50 mM TRIS/HCl pH 8 buffer, 10 mM MgCl2, 30 U CIP (NEB, Ipswich, Mass., USA), 0.02 U SVP and the oligonucleotide compound. The stability of the ASOs against SVPD was determined by performing the nuclease assays over a one day time course. In each reaction mix an amount about 0.2 mg/mL ASO in a totaly volume of 150 μl was used.

The incubation period of 24 h at 37° C. was performed on an autosampler, the SVPD and reactions and the ASO stabilities were monitored in time intervals by an UHPLC system equipped with a diode-array detector and coupled with electrospray ionization-time of flight-mass spectrometry (ESI-ToF-MS). To generate the t=0 h time point, the enzyme was added into the reaction mix, directly before the first injection. Further injections took place at regular intervals over a period of 24 hours.

Compounds tested, 1122_67, 1813_1 and the reference compounds 1100673, 1101657, 1102130, 1103014, and 1102987.

Results:

The data is illustrated in FIG. 9 . Whilst the three highlighted reference compounds from WO2019/217708 and the 1122_67 and 1813_1 compounds had good stability in the SVPD assay, the 2 reference compounds from WO2019/217708 with the closest sequence to 1122_67 and 1813_1, compounds 1103014 and 1102987 were notably more vulnerable to SVPD degradation as compared to 1122_67 and 1813_1.

Example 12: WT and polyQ Ataxin 3 Protein Levels in Human SCA3 Patient Derived Fibroblasts Treated with Selected Oligonucleotides (ASO) Materials and Methods:

This experiment was performed to investigate the efficacy of efficacy of knock down of the LNA oligonucleotides, 1122_67 and 1122_33, as compared to the prior art compounds, 1100673 and 1102130 in SCA3 patient derived fibroblasts, allowing for an assessment of the efficacy on the disease causing ataxin3 allele and the ataxin3 WT allele.

Cell line used for the ASO treatment, human SCA3 patient derived fibroblasts (GM06153—Coriell Institute). One hundred thousand cells were seeded per well in a 24 well plate with a total volume of 1 ml. ASOs were added immediately after to a final concentration of 10 μM (gymnotic uptake). After 4 days of incubation at, cells were washed twice with PBS, and harvested in 200 μl RIPA buffer (Thermo Scientific, Pierce).

Western blots were performed on the capillary-based immunoassay platform (WES, ProteinSimple) using a WES 12-230 kDa Wes Separation Module. Cell lysate were diluted 10× in Sample load buffer (ProteinSimple) prior loading on the cartridge. Primary antibody for Ataxin 3 (rabbit monoclonal antibody, prod. #702788 from Invitrogen) and for HPRT (rabbit monoclonal antibody, cat. #Ab109021 from Abcam). Both antibodies were used in 1/100 dilutions. Goat anti-rabbit HRP conjugate (Part. #DM-001, ProteinSimple) was used as secondary antibody.

Compass software (ProteinSimple) was for quantification of the protein bands.

Results:

To show an efficient KD of both the wild type as well as the polyQ extended Ataxin 3 protein, GM06153 cells were treated with 10 uM of ASO for four days prior to protein analysis on the WES. Ataxin 3 antibody recognize both isoforms, and the intensity (area under peak) was normalized to the protein input based on the signal from HPRT. As seen from the FIGS. 10A and B, we observe that upon treatment with 1122_67 and 1122_33, there is an increased reduction in the polyQ extended Ataxin 3 compared to the wild type Ataxin 3. This trend is not observed for the other ASOs (Scrambled control, 1100673 or 1102130) where we observe a higher amount of the polyQ extended Ataxin 3, compared to the wild type Ataxin 3. A higher activity on the disease causing polyQ extended Ataxin 3 than the WT Ataxin 3 is preferable as it allows a selective reduction of the disease causing allele.

Example 13: Redesign Library Materials and Methods:

Compound ID Nos. 1122_67 and 1122_33 were used as parents in a redesign library. The compounds in the redesign library differed from the parent compounds and each other in internucleoside linkages and/or the nucleosides used. In general, nucleosides at specific positions were varied between LNA, DNA and nucleoside analogs with different modifications in the 2′ position in the ribose. In some compounds, a MOPS or MOPO internucleoside linkages was introduced. The internucleoside linkages were otherwise phosphorothioate linkages. In some compounds, the chirality was controlled by use of phosphorothioate linkages providing for sterodefined backbones. The modifications employed are illustrated below.

The compounds of the redesign library are listed in Table 11, where the structure of each compound is described by the hierarchical editing language for macromolecules (HELM) (for details, see Zhang et al., Chem. Inf. Model. 2012, 52, 10, 2796-2806) using the following HELM annotation keys:

[LR](G) is a beta-D-oxy-LNA guanine nucleoside, [LR](T) is a beta-D-oxy-LNA thymine nucleoside, [LR](A) is a beta-D-oxy-LNA adenine nucleoside, [LR]([5meC] is a beta-D-oxy-LNA 5-methyl cytosine nucleoside, [dR](G) is a DNA guanine nucleoside, [dR](T) is a DNA thymine nucleoside, [dR](A) is a DNA adenine nucleoside, [dR]([C] is a DNA cytosine nucleoside, [sP] is a phosphorothioate internucleoside linkage (stereo undefined) [ssP] is a stereodefined Sp phosphorothioate internucleoside linkage [MOPS] is a 3-methoxypropylphosphonothioate internucleoside linkage [MOPO] is a 3-methoxypropylphosphonate internucleoside linkage [mR](G) is a 2′-O-methyl guanine nucleoside, [mR](U) is a 2′-O-methyl uracil nucleoside, [mR](A) is a 2′-O-methyl adenine nucleoside, [mR](C) is a 2′-O-methyl cytosine nucleoside, [MOE](G) is a 2′-O-methoxyethyl guanine nucleoside, [MOE](T) is a 2′-O-methoxyethyl thymine nucleoside, [MOE](A) is a 2′-O-methoxyethyl adenine nucleoside, [MOE]([5meC]) is a 2′-O-methoxyethyl 5-methyl cytosine nucleoside, [fR](G) is a 2′-fluoro guanine nucleoside, [fR](U) is a 2′-fluoro uracil nucleoside, [fR]R(A) is a 2′-fluoro adenine nucleoside, [fR](C) is a 2′-fluoro cytosine nucleoside.

Results:

In Table 11, a compound with a compound ID number “1122_” or “1816_” is a modified version of SEQ ID NO: 1122 or SEQ ID NO: 1816, respectively.

TABLE 11 Compound and HELM table CMPIDNO HELM 1122_82 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[MOE]([5meC])[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_83 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [dR](T)[sP]•[mR](U)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_84 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [mR](U)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_85 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[mR](U)[sP]•[dR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_86 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [mR](U)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_87 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[mR](U)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_88 [LR](A)[sP]•[dR](A)[sP]•[mR](U)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_89 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[mR](U)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_90 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[mR](U)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_91 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[mR](U)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_92 [LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[MOE]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_93 [MOE](A)[sP]•[MOE](A)[sP]•[MOE](T)[sP]•[MOE]([5meC])[sP]•[MOE](T)[sP]• [MOE](T)[sP]•[MOE](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[MOE]([5meC])[sP]• [MOE](T)[sP]•[MOE](T)[sP]•[MOE]([5meC])[sP]•[MOE]([5meC]) 1122_94 [MOE](A)[sP]•[MOE](A)P•[MOE](T)P•[MOE]([5meC])P•[MOE](T)P• [MOE](T)P•[MOE](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[MOE]([5meC])P• [MOE](T)P•[MOE](T)[sP]•[MOE]([5meC])[sP]•[MOE]([5meC]) 1122_95 [LR](A)[sP]•[mR](A)[sP]•[mR](U)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [LR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [LR](T)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_96 [LR](A)[sP]•[LR](A)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [LR](T)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_97 [LR](A)[sP]•[LR](A)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[LR]([5meC])[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [LR](T)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_98 [LR](A)[sP]•[LR](A)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[MOE]([5meC])[sP]• [LR](T)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_99 [LR](A)[sP]•[LR](A)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[MOE]([5meC])[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [LR](T)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_100 [LR](A)[sP]•[LR](A)[sP]•[LR](T)[sP]•[LR]([5meC])[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]•[dR](C)[sP]• [LR](T)[sP]•[mR](U)[sP]•[LR]([5meC])[sP]•[LR]([5meC]) 1122_101 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[dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[mR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_60 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[mR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_61 [LR](G)[sP]•[LR](A)[sP]•[mR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_62 [LR](G)[sP]•[mR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_63 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[fR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_64 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [fR](C)[sP]•[LR](T)[sP]•[LR](T) 1816_65 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [mR](C)[sP]•[LR](T)[sP]•[LR](T) 1816_66 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[mR](C)[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_67 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[fR](U)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_68 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[fR](U)[sP]•[LR](T) 1816_69 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[fR](U)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_70 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [fR](U)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_71 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[fR](U)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_72 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[fR](U)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_73 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [fR](U)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_74 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[fR](U)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_75 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[MOPO]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_76 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[MOPO]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_77 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[MOPO]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_78 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[MOPO]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_79 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[MOPO]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_80 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[MOPO]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_81 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[MOPO]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_82 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[MOPO]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_83 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[MOPO]•[LR](T)[sP]•[LR](T) 1816_84 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[MOPS]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_85 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[MOPS]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_86 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[MOPS]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_87 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[MOPS]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_88 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[MOPS]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_89 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[MOPS]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_90 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[MOPS]•[dR](T)[sP]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_91 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[MOPS]• [LR]([5meC])[sP]•[LR](T)[sP]•[LR](T) 1816_92 [LR](G)[sP]•[LR](A)[sP]•[dR](A)[sP]•[dR](T)[sP]•[LR]([5meC])[sP]• [dR](T)[sP]•[LR](T)[sP]•[LR](A)[sP]•[dR](T)[sP]•[dR](T)[sP]• [dR](T)[sP]•[dR](A)[sP]•[dR](C)[sP]•[dR](A)[sP]•[dR](T)[sP]• [LR]([5meC])[MOPS]•[LR](T)[sP]•[LR](T)

Example 14: Testing In Vitro Efficacy of LNA Oligonucleotides in iCell® GlutaNeurons at 1.25 μM and 62.5 nM Materials and Methods:

The compounds of the redesign library described in Table 11 of Example 13 were evaluated for potency in human iPSC cells using two concentrations; 1.25 μM and 62.5 nM, comparing the effect on the ATXN3 transcript and the KCNB2 transcript at both concentrations.

The iCell GlutaNeuron cells were prepared and maintained essentially as described in Example 5 & Table 2. 96-well cell culture plates were coated with Poly-L-Omithine (0.01%) (Sigma-P4957), 100p/well for 4 hours. Rinsed 3 times with PBS and coated with Laminin (Roche Diagnostic, 11243217001) 0.5 mg/ml diluted 1:500 in PBS overnight at 4 degrees Celsius. The cells were treated and maintained as per recommendation by the vendor using the provided protocol: iCell® GlutaNeurons, User's Guide, Document ID: X1005, Version 1.2, Cellular Dynamics, Fujifilm; available at https: address cdn.stemcell.com/media/files/manual/MADX1005-icell_glutaneurons_users_guide.pdf (accessed on e.g. 10 Nov. 2020). Compounds were added to the cells from pre-dilution plates (compound diluted in PBS) to reach the desired final concentration. RNA purification and qPCR were performed as described in Example 2; however, using the qPCR assays described below for analysis.

Human KCNB2 pre-mRNA using the qPCR assay: “Hs.PT.58.39309562”, PrimeTime ® XL qPCR Assay (Integrated DNA Technologies (IDT), Leuven, Belgium) Probe: (SEQ ID NO: 1989) 5′-/56-FAM/AGA AAC CTA/ZEN/ACT CAT CAG TGG CTG CAA/3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1990) 5′-GAA CAG GAT AGA CAC GAT GGC-3′ Primer 2: (SEQ ID NO: 1991) 5′-AGA GAC TAT GCG AGA GCG A-3′ Human ATXN3 pre-mRNA using the qPCR assay: costum design “(ATXN3_exon_8-9(1)”, PrimeTime ® XL qPCR Assay (IDT). Probe: (SEQ ID NO: 1134) 5′-/56-FAM/CTCCGCAGG/ZEN/GCT ATTCAGCT AAGT/3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1135) 5′-AGT AAGATTTGT ACCTGATGTCTGT-3′ Primer 2: (SEQ ID NO: 1136) 5′-CATGGAAGATGAGGAAGCAGAT-3′ Human TBP pre-mRNA using the qPCR assay: “Hs.PT.58v.39858774”, PrimeTime ® XL qPCR Assay (IDT) Probe: (SEQ ID NO: 1131) 5′-/5HEX/TGA TCT TTG/ZEN/CAG TGA CCC AGC ATC A/3IABkFQ/-3′ Primer 1: (SEQ ID NO: 1132) 5′-GCT GTT TAA CTT CGC TTC CG-3′ Primer 2: (SEQ ID NO: 1133) 5′-CAG CAA CTT CCT CAA TTC CTT G-3′

Results:

The results from this screen is presented in Table 12 as the level of remaining transcript with values given in percent (%) relative to untreated cells, i.e. low level means efficient knockdown. This was done for each of the applied concentrations for each of the two target genes (ATXN3 and KCNB2). Most of the tested compounds showed efficacious knockdown of the ATXN3 transcript at both concentrations used. The effect on the KCNB2 transcript was variable.

TABLE 12 1.25 uM (% 62.5 nM (% 1.25 uM (% 62.5 nM (% ATXN3 ATXN3 KCNB2 KCNB2 CMP ID mRNA mRNA mRNA mRNA NO remaining) remaining) remaining) remaining) 1122_33 14.84 41.69 66.57 88.67 1122_67 15.03 39.41 9.93 59.09 1122_82 18.29 50.93 17.61 73.26 1122_83 18.12 54.07 84.73 96.23 1122_84 12.59 40.95 27.66 74.71 1122_85 15.13 40.70 23.47 82.11 1122_86 16.64 53.29 75.13 113.41 1122_87 13.46 35.67 19.90 69.29 1122_88 12.85 34.25 24.41 68.38 1122_89 16.45 46.10 38.00 75.09 1122_90 18.52 50.88 60.64 93.90 1122_91 17.83 45.26 35.19 86.04 1122_92 15.49 41.46 21.27 68.79 1122_93 65.98 89.20 90.58 103.35 1122_94 63.83 92.70 82.15 98.30 1122_95 15.40 35.25 6.65 49.08 1122_96 16.51 44.63 2.69 48.45 1122_97 37.79 65.35 42.78 75.62 1122_98 14.34 38.27 0.91 42.75 1122_99 33.48 58.08 25.62 69.29 1122_100 12.21 31.92 0.85 44.41 1122_101 15.41 46.59 60.45 90.56 1122_102 15.62 41.71 16.98 62.88 1122_103 14.11 37.53 2.61 46.87 1122_104 18.01 47.10 36.56 81.02 1122_105 18.20 43.65 19.99 74.46 1122_106 16.64 36.77 7.75 55.14 1122_107 14.84 41.59 32.47 69.47 1122_108 12.89 32.26 8.10 72.49 1122_109 15.35 35.47 2.01 57.70 1122_110 19.02 45.56 0.72 45.61 1122_111 55.00 73.98 36.41 88.13 1122_112 16.38 40.70 0.77 50.17 1122_113 29.42 56.92 17.68 60.51 1122_114 13.63 33.67 0.43 42.62 1122_115 18.86 46.13 57.49 98.41 1122_116 31.73 59.42 28.44 86.09 1122_117 26.55 55.77 10.27 67.46 1122_118 49.24 68.77 52.70 88.13 1122_119 19.51 44.68 9.36 60.99 1122_120 16.50 40.36 2.16 51.59 1122_121 16.61 40.45 5.55 56.34 1122_123 15.49 38.63 0.95 52.77 1122_124 28.90 54.57 17.31 68.48 1122_125 15.75 41.51 12.29 63.50 1122_126 15.68 44.30 9.96 63.90 1122_127 14.91 45.71 9.92 55.07 1122_128 18.12 46.12 20.98 79.79 1122_129 15.62 44.07 9.19 69.22 1122_130 14.90 43.91 8.27 68.50 1122_131 17.75 46.92 20.03 67.67 1122_132 17.93 41.86 8.22 72.39 1122_133 18.11 47.91 14.60 78.23 1122_134 17.42 48.52 14.02 61.73 1122_135 14.62 46.43 3.71 52.73 1122_136 16.28 35.03 8.48 56.82 1122_137 14.92 37.45 12.42 65.30 1122_138 14.40 37.58 14.48 63.64 1122_139 15.06 38.30 14.21 66.30 1122_140 14.40 37.78 18.42 63.01 1122_141 16.19 37.64 16.31 64.03 1122_142 15.90 40.17 15.61 61.47 1122_143 14.70 103.24 12.58 109.05 1122_144 15.85 38.70 24.26 63.50 1122_145 14.15 36.53 13.02 67.51 1122_146 15.95 38.11 20.70 69.38 1122_147 15.08 40.89 19.48 62.04 1122_148 17.05 37.47 15.74 57.67 1122_149 15.43 35.40 43.92 78.04 1122_150 14.10 34.07 43.11 82.00 1122_151 15.65 37.73 48.08 92.95 1122_152 13.89 33.97 32.02 83.04 1122_153 13.97 35.53 40.47 82.39 1122_154 13.75 34.07 35.44 86.80 1122_155 14.15 43.77 43.08 83.80 1122_156 15.13 37.99 44.64 87.46 1122_157 14.34 40.19 57.37 88.72 1122_158 13.68 35.71 42.68 80.61 1122_159 15.47 40.55 57.30 86.78 1122_160 13.51 38.20 36.47 80.75 1122_161 15.52 42.53 10.78 64.30 1122_162 16.08 46.05 43.50 90.89 1122_163 17.28 45.49 42.75 86.76 1122_164 33.44 63.29 64.52 94.34 1122_165 29.00 63.38 67.97 84.55 1122_166 16.50 50.60 37.71 85.58 1122_167 12.92 42.08 37.91 76.46 1122_168 17.21 53.77 74.23 98.46 1122_169 13.00 41.35 17.57 69.24 1122_170 15.62 48.53 71.05 92.86 1122_171 12.95 35.94 10.80 59.51 1122_172 14.15 40.39 30.00 76.26 1122_173 16.04 48.13 50.42 95.73 1122_174 16.06 46.62 27.28 75.84 1122_175 17.19 41.23 44.35 89.61 1122_176 12.72 38.58 24.65 74.88 1122_177 43.57 68.03 56.40 78.38 1122_178 18.39 48.85 7.77 60.36 1122_179 12.21 36.54 0.66 39.24 1122_180 11.41 29.30 2.53 50.10 1122_181 11.39 29.60 1.37 45.39 1122_182 11.91 33.43 1.00 38.58 1122_183 15.53 53.20 70.04 89.74 1122_184 18.29 50.25 71.87 94.73 1122_185 12.42 38.65 16.98 64.32 1122_186 15.43 35.73 0.60 38.92 1122_188 95.10 91.87 98.34 92.17 1122_189 13.17 45.93 42.56 81.86 1122_190 88.24 96.08 101.92 93.17 1122_191 17.43 47.23 35.22 84.24 1122_192 14.50 41.74 2.75 47.15 1122_193 17.94 45.59 16.35 70.52 1122_194 19.14 42.96 2.51 44.63 1122_195 15.03 41.04 6.84 58.60 1122_196 14.86 39.28 0.98 47.63 1122_197 14.80 39.13 0.62 45.40 1122_198 23.68 54.40 20.87 71.13 1122_199 22.98 50.51 18.55 67.76 1122_200 23.58 50.62 37.86 81.81 1122_201 19.40 46.35 7.15 59.27 1122_202 18.20 46.98 5.78 54.72 1122_203 17.69 45.67 2.10 48.19 1122_204 13.49 37.08 0.50 43.42 1122_205 115.04 44.88 5.19 83.93 1122_206 12.85 35.68 1.05 52.13 1122_207 16.58 45.34 58.08 97.54 1122_208 17.59 47.72 13.12 61.52 1122_209 18.16 44.97 35.65 72.69 1122_210 17.36 47.09 30.36 68.94 1122_211 19.96 46.56 20.87 72.34 1122_212 24.09 54.75 49.10 83.35 1122_213 18.37 48.15 27.49 74.55 1122_214 14.29 39.30 15.92 66.14 1122_215 15.37 38.56 2.04 41.18 1122_216 15.01 42.66 7.02 58.95 1122_217 17.30 46.90 32.59 82.10 1122_218 13.77 42.95 25.43 71.68 1122_219 12.87 37.59 17.95 52.45 1122_220 13.52 38.61 1.85 48.48 1122_221 18.36 45.47 29.00 75.06 1122_222 23.95 54.80 19.25 67.91 1122_223 19.96 48.20 33.50 74.16 1122_224 68.09 95.88 81.06 104.47 1122_225 31.31 66.62 53.44 90.70 1122_226 102.33 93.40 96.03 101.72 1122_227 17.68 49.92 63.44 98.06 1122_228 12.94 28.36 0.52 40.67 1122_229 13.82 36.60 25.36 83.32 1122_230 13.78 29.77 1.16 53.35 1122_231 13.75 34.55 14.04 67.82 1122_232 12.79 33.53 16.70 73.24 1122_233 11.52 28.88 0.67 39.96 1122_234 12.10 29.35 0.12 30.89 1122_235 10.75 31.37 1.35 45.12 1122_236 15.54 36.00 19.38 78.46 1122_237 14.85 38.11 20.56 76.35 1122_238 98.98 100.70 93.56 109.21 1122_239 18.93 56.23 59.59 93.71 1122_240 14.80 38.69 0.90 42.40 1122_241 15.37 46.65 20.38 66.87 1122_242 15.24 42.10 13.87 68.39 1122_243 15.73 44.21 14.67 66.50 1122_244 14.11 40.27 0.86 39.99 1122_245 13.14 33.83 0.38 39.46 1122_247 12.86 33.71 0.90 43.55 1122_248 90.91 95.53 106.59 91.46 1122_249 14.22 41.84 40.90 87.00 1122_250 90.31 100.03 100.46 97.45 1122_251 102.82 102.41 98.63 99.26 1122_252 16.50 48.66 38.13 85.83 1122_253 17.79 48.73 31.96 79.20 1122_254 16.26 46.83 26.68 70.97 1122_255 16.23 39.36 1.22 48.88 1122_256 18.48 44.91 7.37 62.07 1122_257 18.72 43.81 1.85 49.52 1122_258 28.90 59.55 22.76 80.32 1122_259 13.02 35.53 0.27 37.49 1122_260 39.03 64.19 25.97 75.30 1122_261 25.96 54.58 4.80 54.40 1122_262 64.09 79.15 48.38 86.81 1122_263 41.44 64.92 14.48 60.49 1122_264 31.93 53.80 8.86 57.82 1122_265 21.30 46.83 1.90 48.70 1122_266 12.74 38.89 0.38 39.26 1122_267 13.34 34.60 0.35 35.53 1122_268 21.75 52.36 45.71 88.45 1122_269 15.62 34.21 0.99 42.01 1122_270 18.23 48.08 55.25 92.41 1122_271 29.49 58.90 12.49 74.08 1122_272 22.71 53.62 17.96 86.69 1122_273 30.84 63.97 39.74 79.91 1122_274 25.06 55.33 14.72 72.24 1122_275 46.36 77.28 49.33 91.76 1122_276 22.07 52.96 22.13 75.39 1122_277 24.76 52.41 2.80 104.85 1122_278 16.09 39.55 1.05 53.39 1122_279 16.97 41.64 2.59 53.82 1122_280 19.16 47.62 53.88 89.20 1122_281 15.33 35.15 1.21 49.25 1122_282 18.74 46.47 19.18 70.60 1122_283 14.21 38.75 0.92 49.39 1122_284 21.36 50.04 17.88 77.20 1122_285 24.58 53.16 11.30 69.32 1122_286 26.61 59.28 32.18 85.20 1122_287 19.11 46.43 40.68 87.49 1122_288 17.38 46.11 29.23 83.51 1122_289 22.65 50.00 18.22 80.28 1122_290 15.73 46.26 46.94 97.94 1122_291 17.59 47.83 57.89 97.49 1122_292 18.87 45.34 51.24 76.10 1122_293 19.91 50.35 80.98 93.18 1122_294 15.68 44.72 63.82 89.72 1122_295 17.72 46.95 72.65 97.04 1122_296 18.22 45.33 84.64 65.09 1122_297 21.12 52.34 55.13 90.63 1122_298 19.04 49.85 43.05 83.36 1122_299 21.00 53.98 52.09 88.91 1122_300 21.03 56.31 63.83 96.36 1122_301 15.75 41.51 15.41 71.45 1122_302 15.98 41.88 33.75 82.19 1122_303 14.92 33.22 16.97 73.97 1122_304 12.17 33.01 0.96 54.41 1122_305 17.66 38.97 1.49 58.34 1122_306 18.52 42.72 3.38 58.51 1122_307 42.52 62.86 49.15 83.10 1122_308 15.75 46.33 18.59 81.21 1122_309 18.69 46.63 43.91 88.58 1122_310 21.63 49.10 64.20 92.07 1122_311 15.23 36.71 0.82 55.64 1122_312 16.28 40.30 14.72 71.61 1122_313 17.13 42.41 26.14 78.29 1122_314 17.15 44.16 17.44 74.43 1122_315 15.87 37.68 3.87 56.29 1122_316 12.46 40.91 15.99 79.86 1122_317 19.92 51.35 75.13 91.76 1122_318 19.72 55.90 84.62 96.07 1122_319 14.89 40.90 30.49 84.12 1122_320 14.12 38.83 35.60 80.47 1122_321 16.55 47.64 39.44 85.96 1122_322 19.89 46.85 51.06 83.91 1122_323 16.91 39.33 31.59 85.79 1122_324 13.32 34.73 23.93 76.58 1122_325 13.64 36.88 34.23 82.54 1122_326 17.03 47.80 65.51 93.50 1122_327 13.18 34.45 0.61 41.05 1122_328 28.85 51.75 33.40 73.68 1122_329 18.98 45.02 9.68 55.71 1122_330 26.09 52.37 29.65 77.91 1122_331 19.50 48.30 9.77 63.78 1122_332 17.96 54.05 7.57 72.56 1122_333 18.01 45.82 5.15 54.92 1122_334 16.51 45.70 5.62 58.84 1122_335 15.28 35.40 5.27 59.31 1122_336 18.18 45.30 24.99 75.94 1122_337 27.32 61.68 43.37 85.62 1122_338 22.35 54.50 54.55 91.68 1122_339 22.42 50.98 58.10 91.45 1122_340 25.98 55.48 52.18 86.84 1122_341 40.04 67.86 66.45 85.88 1122_342 33.39 65.88 81.06 97.00 1122_343 23.96 57.77 66.11 92.29 1122_344 19.07 50.69 51.17 87.76 1122_345 22.73 44.26 43.13 68.43 1122_346 28.50 52.00 39.06 76.26 1122_347 25.55 51.22 43.01 74.16 1122_348 31.34 57.48 78.45 88.42 1122_349 27.00 49.27 70.75 88.91 1122_350 27.26 49.10 71.61 83.98 1122_351 29.96 53.04 67.90 84.73 1122_352 47.95 67.08 76.26 94.96 1122_353 23.04 45.13 38.20 81.69 1122_354 19.76 54.60 20.83 84.09 1122_355 28.72 64.34 44.12 83.38 1122_356 23.17 54.13 35.26 84.71 1122_357 36.84 57.72 87.02 89.08 1122_358 31.44 55.16 70.12 98.02 1122_359 23.29 42.56 75.05 86.97 1122_360 46.17 76.08 83.99 97.08 1122_361 45.08 79.97 59.53 89.80 1122_362 20.19 52.03 67.99 91.95 1122_363 20.03 51.16 61.54 92.18 1122_364 18.52 49.68 67.09 90.93 1122_365 27.89 63.70 84.75 96.17 1122_366 26.03 58.79 72.51 94.70 1122_367 26.40 57.55 74.08 90.71 1122_368 22.86 56.72 76.23 94.79 1122_369 25.29 55.69 84.08 96.59 1122_370 22.13 53.63 79.33 102.20 1122_371 20.92 49.71 82.90 102.93 1122_372 78.75 89.48 90.13 86.02 1122_373 21.28 37.00 29.48 65.66 1122_374 21.07 39.82 38.49 65.24 1122_375 27.80 45.09 50.37 98.76 1122_376 41.22 73.10 74.20 89.62 1122_377 33.08 70.49 55.82 86.79 1122_378 39.67 76.42 61.47 101.82 1122_379 33.59 55.07 60.53 94.20 1122_380 35.32 56.74 61.02 91.68 1122_381 23.70 36.27 41.38 76.44 1122_382 44.17 72.48 102.42 107.96 1122_383 26.62 48.72 59.80 80.04 1122_384 20.81 36.64 68.01 81.12 1122_385 23.61 42.60 73.96 82.99 1122_386 28.37 47.44 86.39 91.79 1122_387 23.74 47.69 77.56 93.28 1122_388 24.35 47.90 92.08 97.12 1122_389 34.32 57.61 94.04 99.30 1122_390 34.60 56.65 91.59 90.00 1122_391 31.49 54.88 87.18 93.65 1122_392 25.53 49.54 89.63 87.21 1122_393 32.46 55.79 87.24 90.73 1122_394 29.70 54.84 91.32 91.63 1122_395 24.81 48.43 84.39 85.36 1122_396 21.64 48.37 88.32 106.30 1122_397 27.44 52.67 46.66 85.73 1122_398 27.46 48.78 58.77 84.48 1122_399 33.72 53.83 77.24 96.59 1122_400 34.23 70.11 74.49 91.35 1122_401 40.45 65.20 74.57 92.43 1122_402 44.99 66.13 68.64 94.15 1122_403 41.50 62.63 74.02 88.51 1122_404 49.88 69.59 81.27 104.32 1122_405 26.42 46.67 64.61 85.54 1122_406 22.20 43.08 64.84 93.36 1816_2 60.44 75.00 72.19 101.12 1816_3 32.49 64.72 81.52 99.97 1816_4 20.62 53.39 86.99 94.28 1816_5 28.44 63.88 87.90 101.86 1816_6 22.90 52.87 82.34 95.59 1816_7 80.07 88.95 93.22 101.92 1816_8 43.52 67.76 96.84 104.02 1816_9 21.44 54.71 92.27 103.41 1816_10 17.09 49.44 76.99 95.59 1816_11 21.06 53.06 78.28 98.39 1816_12 20.06 55.59 84.79 102.08 1816_13 17.14 48.05 93.50 100.40 1816_14 19.55 59.40 90.51 105.28 1816_15 22.72 59.25 101.19 106.47 1816_16 24.44 62.31 96.03 102.54 1816_17 22.53 55.69 91.49 101.21 1816_18 21.46 53.93 85.50 99.48 1816_19 21.31 54.40 87.10 95.06 1816_20 23.72 53.87 92.47 105.09 1816_21 19.76 50.72 89.60 105.93 1816_22 95.15 104.15 102.13 103.05 1816_24 91.75 95.00 98.28 102.02 1816_25 56.04 88.36 86.52 109.26 1816_26 102.21 101.78 105.12 108.00 1816_27 24.15 67.01 92.61 99.83 1816_28 21.76 57.39 101.49 98.46 1816_29 30.53 72.76 99.75 98.54 1816_30 24.86 57.27 74.75 84.15 1816_31 41.00 72.35 106.54 101.47 1816_32 21.68 53.64 83.45 100.28 1816_33 36.10 74.71 78.48 109.62 1816_34 43.48 68.78 90.47 99.53 1816_35 78.05 89.09 93.93 96.53 1816_36 81.65 87.07 91.10 97.06 1816_37 62.87 82.62 96.63 102.82 1816_38 34.50 62.63 88.71 98.47 1816_39 17.06 43.55 68.41 91.25 1816_40 22.42 59.75 58.94 93.82 1816_41 24.34 60.50 78.94 94.74 1816_42 17.21 51.49 88.87 106.71 1816_43 15.45 48.67 93.79 96.40 1816_44 27.69 62.14 89.86 98.76 1816_45 28.43 62.53 93.60 104.83 1816_46 38.65 95.31 99.48 95.34 1816_47 39.25 73.69 85.32 99.46 1816_48 72.88 95.79 95.86 105.23 1816_49 42.05 72.73 95.26 95.07 1816_50 24.87 61.64 93.95 95.41 1816_51 24.13 58.48 94.87 86.45 1816_52 19.07 46.64 61.73 103.50 1816_53 24.65 59.39 95.95 103.39 1816_54 18.52 50.37 75.25 100.65 1816_55 21.38 55.81 80.93 97.54 1816_56 23.72 74.56 81.95 94.12 1816_57 31.08 63.23 97.13 97.12 1816_58 26.25 60.06 82.44 91.63 1816_59 38.54 74.45 96.86 99.10 1816_60 21.27 53.40 102.79 95.99 1816_61 22.84 55.21 84.32 108.50 1816_62 28.18 66.34 89.02 100.92 1816_63 22.52 58.32 99.09 104.39 1816_64 17.21 48.69 101.88 109.05 1816_65 18.02 48.71 97.59 108.12 1816_66 24.48 59.70 98.74 91.48 1816_67 25.08 60.20 102.17 102.41 1816_68 18.20 52.03 93.53 107.27 1816_69 28.58 64.76 100.03 95.56 1816_70 32.32 65.70 93.94 104.28 1816_71 47.83 78.25 89.25 109.07 1816_72 35.33 62.27 91.64 107.72 1816_73 20.55 98.77 85.68 103.65 1816_74 26.71 60.10 87.66 99.83 1816_75 31.75 70.98 92.29 103.96 1816_76 30.37 70.69 90.86 92.75 1816_77 46.64 80.44 96.29 96.64 1816_78 66.00 85.83 105.70 99.60 1816_79 48.67 81.73 106.97 104.42 1816_80 44.30 78.70 103.70 96.43 1816_81 35.02 71.62 106.18 92.41 1816_82 35.59 74.21 101.32 95.75 1816_83 31.00 68.54 101.18 108.75 1816_84 36.03 64.72 106.82 105.76 1816_85 33.15 61.56 88.45 90.53 1816_86 56.37 79.42 90.69 82.37 1816_87 78.23 89.04 100.79 100.34 1816_88 59.21 78.21 98.16 100.09 1816_89 48.25 69.64 108.37 103.72 1816_90 45.69 67.16 98.04 103.46 1816_91 42.96 60.75 102.38 96.43 1816_92 25.54 49.02 99.38 98.21

Example 15: In Vitro Toxicity Evaluation—Caspase Assays Materials and Methods:

Based on the results in Table 12, the 79 compounds most potent in targeting ATXN3 with the least effect on KCNB2 were selected for toxicity evaluation in two caspase activation assays (see Dieckmann et al., Molecular Therapy: Nucleic Acids Vol. 10 Mar. 2018, pp 45 54); respectively conducted in HepG2 cells (“HEPG2”) and 3T3 cells (“3T”).

Results.

The results are shown in Table 13. Using the same scoring criteria as in Example 7, the vast majority of the compounds were found safe in the toxicity assessment. In the “HEPG2” assay, compound 1816_52 had a score of 0.5, compounds 1816_0 and 1816_40 a score of 1, and compound 1816_39 a score of 3. In the “3T3” assay, the compounds with a score of 0.5 were: 18161_11, 1816_74, and 1816_30; the compounds with a score of 1 were: 1816_54 and 1816_10; the compound with a score of two was: 1816_51; and the compounds with a score of three were: 1816_40 and 1816_39,

TABLE 13 HepG2 3T3 EC50 EC50 EC50 ratio Assay Assay ATXN3 KCNB2 (KCNB2/ CMPIDNO score score (nM) (nM) ATXN3) 1122_33 0 0 103.7 2330 22.5 1122_67 0 0 71.09 155.40 2.20 1122_91 0 0 87.73 673.50 7.68 1122_107 0 0 89.93 789.00 8.77 1122_125 0 0 81.85 98.95 1.2 1122_144 0 0 103.10 515.60 5.00 1122_146 0 0 93.11 490.10 5.26 1122_149 0 0 62.77 766.80 12.22 1122_150 0 0 89.36 808.50 9.05 1122_151 0 0 75.71 654.80 8.65 1122_152 0 0 66.09 662.20 10.02 1122_153 0 0 84.38 1208.00 14.32 1122_154 0 0 64.22 820.00 12.77 1122_155 0 0 75.16 1303.00 17.34 1122_156 0 0 55.26 736.10 13.32 1122_157 0 0 71.27 1658.00 23.26 1122_158 0 0 53.18 1217.00 22.88 1122_159 0 0 92.93 1472.00 15.84 1122_160 0 0 57.47 791.50 13.77 1122_163 0 0 98.81 564.40 5.71 1122_167 0 0 87.59 763.60 8.72 1122_172 0 0 67.13 465.70 6.94 1122_175 0 0 127.90 1277.00 9.98 1122_218 0 0 87.76 311.80 3.55 1122_294 0 0 93.12 2338.00 25.11 1122_296 0 0 114.80 8032.00 69.97 1122_302 0 0 104.10 682.80 6.56 1122_313 0 0 90.50 418.70 4.63 1122_319 0 0 70.04 408.20 5.83 1122_320 0 0 87.66 364.50 4.16 1122_323 0 0 99.59 720.60 7.24 1122_325 0 0 90.83 585.40 6.45 1122_359 0 0 108.80 1365.00 12.55 1122_373 0 0 80.50 176.20 2.19 1122_374 0 0 111.70 274.20 2.45 1122_375 0 0 173.00 364.20 2.11 1122_381 0 0 83.62 277.80 3.32 1122_384 0 0 117.70 856.90 7.28 1122_385 0 0 112.10 1754.00 15.65 1122_406 0 0 142.70 647.00 4.53 1816_4 0 0 200.90 248307.00 1235.97 1816_6 0 0 261.00 26826.00 102.78 1816_9 0 0 224.00 3280.00 14.64 1816_10 0 1 — — — 1816_11 0 0.5 — — — 1816_12 0 0 110 27238 247.6 1816_13 0 0 129.30 36344.00 281.08 1816_14 0 0 181.10 2262.00 12.49 1816_15 0 0 159.80 18449.00 115.45 1816_17 0 0 208.90 33758.00 161.60 1816_18 0 0 138.40 322538.00 2330.48 1816_19 0 0 180.40 107214.00 594.31 1816_20 0 0 299.50 279468.00 933.12 1816_21 0 0 203.00 16057.00 79.10 1816_28 0 0 141.10 10000.00 70.87 1816_30 1 0.5 — — — 1816_32 0 0 170.80 13406.00 78.49 1816_39 3 3 — — — 1816_40 1 3 — — — 1816_41 0 0 154.50 12106.00 78.36 1816_42 0 0 134.60 63672.00 473.05 1816_43 0 0 89.79 569489.00 6342.45 1816_51 0 0 239.70 9150.00 38.17 1816_52 0.5 2 — — — 1816_53 0 0 392.80 35864.00 91.30 1816_54 0 1 — — — 1816_55 0 0 209.00 7219.00 34.54 1816_58 0 0 259.00 23941.00 92.44 1816_60 0 0 167.10 67695.00 405.12 1816_61 0 0 165.20 22618.00 136.91 1816_63 0 0 263.00 19355.00 73.59 1816_64 0 0 127.00 5929.00 46.69 1816_65 0 0 99.75 36592.00 366.84 1816_66 0 0 351.30 3822.00 10.88 1816_67 0 0 — — — 1816_68 0 0 177.80 112276.00 631.47 1816_74 0 0.5 — — — 1816_91 0 0 — — — 1816_92 0 0 175.20 1472.00 8.40

Example 16: Determination of EC 50 Values for ATXN3 and KCNB2 in iCell® Glutaneurons Materials and Methods:

69 compounds were assessed in an EC50 determination in iCell Glutaneurons including compound 1122_67 and 1122_33. The experimental setup was the same as described in Example 14, except that the following compound concentrations were used (nM): 31.6, 10; 3.2; 0.32; 0.1; 0.03; 0.01 (8-step half-log).

Results:

The resulting EC50 values for ATXN3 and KCNB2 as well as the resulting ratio between the EC50 values (KCNB2/ATXN3) are shown in Table 13. From the data. generated, it was observed that the compounds showed an increased ratio between the determined EC50 values for KCNB2 and ATXN3 as compared to compound 1122_67. The potency of the compounds on ATXN3 knockdown was relatively maintained for most compounds while it was decreased (higher EC50 value) for all compounds when focusing on the potency on KCNB2 knockdown.

Based on the data in Table 12 (double point determination) and Table 13 (caspase in vitro toxicity; EC50 for ATXN3 knock down and the ratio between KCNB2 and ATXN3 EC50 values), 27 compounds (shown in Table 14 and in FIG. 12 ) were selected based on their safety (caspase scores above 0 were discontinued), high potency and efficacy in ATXN3 inhibition, selectivity (i.e., high ratio between KCNB2/ATXN3 EC50 values) as well as their chemical diversity.

The base sequence, sugar sequence and backbone sequence features of the selected compounds are shown in Table 14, using the HELM-dictionary shown below (see Example 13 for more detailed HELM annotations).

Base sequence Sugar sequence Backbone sequence A: (A) D: [dR] M: [MOPS] C: (C) F: [fR] S: [ssP] E: (5meC) L: [LR] X: [sP] G: (G) M: [MOE] T: (T) O: [mR] U: (U)

TABLE 14 Selected compounds CMPIDNO Base sequence Sugar sequence Backbone sequence FIG. 1122_91 AATETTATTUACATCTTEE LDDLDLDDDODDDDDDLLL XXXXXXXXXXXXXXXXXX 12A 1122_107 AAUETTATTTACATCTTEE LLOLDDDDDDDDDDDLDLL XXXXXXXXXXXXXXXXXX 12B 1122_154 AATETTATTTACATCTTEE LDDLDLDDDDDDDDDDLLL XXXXXXXXXXSXXXXXXX 12C 1122_155 AATETTATTTACATCTTEE LDDLDLDDDDDDDDDDLLL XXXXXXXXXXXSXXXXXX 12D 1122_156 AATETTATTTACATCTTEE LDDLDLDDDDDDDDDDLLL XXXXXXXXXXXXSXXXXX 12E 1122_157 AATETTATTTACATCTTEE LDDLDLDDDDDDDDDDLLL XXXXXXXXXXXXXSXXXX 12F 1122_158 AATETTATTTACATCTTEE LDDLDLDDDDDDDDDDLLL XXXXXXXXXXXXXXSXXX 12G 1122_167 AATETTATTTACATCTTEE LDDLDLMDDDDDDDDDLLL XXXXXXXXXXXXXXXXXX 12H 1122_172 AATETTATTTACATCTTEE LDDLDLDDDDDDDDODLLL XXXXXXXXXXXXXXXXXX 12I 1122_175 AATETTATTTACATCTTEE LDDLDLDDDDODDDDDLLL XXXXXXXXXXXXXXXXXX 12J 1122_294 AATETTATTTACATCTTCE LDDLDLDDDDDDDDDDLFL XXXXXXXXXXXXXXXXXX 12K 1122_296 AATCTTATTTACATCTTEE LDDODLDDDDDDDDDDLLL XXXXXXXXXXXXXXXXXX 12L 1122_359 AATETTATTTACATCTTEE LLLLDDDDDDDDDDDLDLL XXXXXXXXXXXXXXMXXX 12M 1122_384 AATETTATTTACATCTTEE LLLLDDDDDDDDDDDLDLL XXXXXXXXXXXXXXXMXX 12N 1122_385 AATETTATTTACATCTTEE LDDLDLDDDDDDDDDDLLL XXXXXMXXXXXXXXXXXX 12O 1816_13 GAATETTATTTACATETT LLDDLDLLDDDDDDDLLL XXXXXXXXXXXSXXXXX 12P 1816_15 GAATETTATTTACATETT LLDDLDLLDDDDDDDLLL XXXXXXXXXXXXXSXXX 12Q 1816_28 GAATETTATTTACATETT LLDDLDLFDDDDDDDLLL XXXXXXXXXXXXXXXXX 12R 1816_41 GAATETTATTTACATETT LLLDLDLLDDDDDDDLLL XXXXXXXXXXXXXXXXX 12S 1816_42 GAATETTATTTACATETT LLDDLDLLDDDDDDDLML XXXXXXXXXXXXXXXXX 12T 1816_43 GAATETTATTTACATETT LLDDLDLLDDDDDDDMLL XXXXXXXXXXXXXXXXX 12U 1816_60 GAATETTATTTACATETT LLDDLDLODDDDDDDLLL XXXXXXXXXXXXXXXXX 12V 1816_61 GAATETTATTTACATETT LLODLDLLDDDDDDDLLL XXXXXXXXXXXXXXXXX 12W 1816_64 GAATETTATTTACATCTT LLDDLDLLDDDDDDDFLL XXXXXXXXXXXXXXXXX 12X 1816_65 GAATETTATTTACATCTT LLDDLDLLDDDDDDDOLL XXXXXXXXXXXXXXXXX 12Y 1816_68 GAATETTATTTACATEUT LLDDLDLLDDDDDDDLFL XXXXXXXXXXXXXXXXX 12Z 1816_92 GAATETTATTTACATETT LLDDLDLLDDDDDDDLLL XXXXXXXXXXXXXXXMX 12AA

TABLE 8B Cortex Midbrain Cerebellum Hippocampus Pons/medulla Striatum Max Max Max Max Max Max EC50 efficacy (% EC50 efficacy (% EC50 efficacy (% EC50 efficacy (% EC50 efficacy (% EC50 efficacy (% Compounds (nM) remaining) (nM) remaining) (nM) remaining) (nM) remaining) (nM) remaining) (nM) remaining) 1856_1 251 33 77 20 434 49 202 41 — 24 103 27 1813_1 260 22 93 20 347 47 279 30 — 22 89 18 1812_1 307 52 156 28 603 50 233 35 — 26 184 32 1809_2 134 57 153 34 511 50 111 46 — 21 93 29 1607_1 193 40 89 17 120 42 81 21 — 15 63 26 1122_62 125 56 74 26 226 16 86 46 — 19 54 36 1122_67 125 23 79 14 261 27 146 22 — 13 88 19 1122_33 102 47 38 16 166 35 79 24 — 17 63 29

TABLE 10 Cortex (A1) Cerebellum Brainstem Midbrain Striatum EC50 Max KD EC50 Max KD EC50 Max KD EC50 Max KD EC50 Max KD Tissue (nM) observed (nM) observed (nM) observed (nM) observed (nM) observed 1 week of 1122_67 242 88% 833 74% 196 87% 165 89% 148 77% treatment 1813_1  278 61% 966 57% 377 85% 183 90% 118 51% 1100673 391 67% 2012 48% 769 79% 279 81% 331 69% 4 week of 1122_67 100 92% 365 81%  81 93%  94 95%  46 89% treatment 1813_1  ND ND ND ND ND ND ND ND ND ND 1100673 199 49% 1229 33% 419 72% 129 74% 130 35% Spinal cord, Spinal cord, Spinal cord, Hippocampus cervical thoracic lumbar EC50 Max KD EC50 Max KD EC50 Max KD EC50 Max KD Tissue (nM) observed (nM) observed (nM) observed (nM) observed 1 week of 1122_67 243 75% 41 89% 39 90% 54 89% treatment 1813_1  341 63% 45 90% 36 92% 48 91% 1100673 516 66% 83 83% 51 83% 68 82% 4 week of 1122_67  89 92% 16 93% Imprecise 93% 18 93% treatment 1813_1  ND ND ND ND ND ND ND ND 1100673 329 52% 48 83% Imprecise 84% 56 84%

TABLE 15 Particular antisense oligonucleotide variants of SEQ ID NO: 1122 Options for nucleobases, sugar modifications and internucleoside linkages for particular antisense oligonucleotides according to the invention. The options from which the nucleoside at each specific residue # in SEQ ID NO: 1122 can be chosen is shown in each line indicated by that residue #, starting from the 5′-end. The selection of a specific nucleobase (“Nucleobase options for residue #”) and a sugar modification (“Sugar modification options for residue #”)  defines the nucleoside at that residue #. The options for the internucleoside linkage between the nucleoside at a specific residue # and the next residue,starting from the 5′-end, is shown in the column entitled “Backbone modification options for internucleoside linkage #”. Residue # Nucleobase options Backbone modification in SEQ ID for residue # Sugar modification options options for NO: 1122 A: (A); C: (C); for residue # internucleoside linkage  (from 5′- E: (5meC); G: (G); D: F: [fR]; L: [LR]; # (from 5′-end) end) T: (T); U: (U) M: [MOE]; O: [mR] M: [MOPS]; S: [ssP]; X: [sP]  1 AAAAAAAAAAAAAAA LLLLLLLLLLLLLLL XXXXXXXXXXXXXXX  2 AAAAAAAAAAAAAAA DLDDDDDDDDDDLLD XXXXXXXXXXXXXXX  3 TUTTTTTTTTTTTTT DODDDDDDDDDDLLD XXXXXXXXXXXXXXX  4 EEEEEEEEEEECEEE LLLLLLLLLLLOLLL XXXXXXXXXXXXXXX  5 TTTTTTTTTTTTTTT DDDDDDDDDDDDDDD XXXXXXXXXXXXXXX  6 TTTTTTTTTTTTTTT LDLLLLLLLLLLDDL XXXXXXXXXXXXXXM  7 AAAAAAAAAAAAAAA DDDDDDDMDDDDDDD XXXXXXXXXXXXXXX  8 TTTTTTTTTTTTTTT DDDDDDDDDDDDDDD XXXXXXXXXXXXXXX  9 TTTTTTTTTTTTTTT DDDDDDDDDDDDDDD XXXXXXXXXXXXXXX 10 UTTTTTTTTTTTTTT ODDDDDDDDDDDDDD XXXXXXXXXXXXXXX 11 AAAAAAAAAAAAAAA DDDDDDDDDODDDDD XXSXXXXXXXXXXXX 12 CCCCCCCCCCCCCCC DDDDDDDDDDDDDDD XXXSXXXXXXXXXXX 13 AAAAAAAAAAAAAAA DDDDDDDDDDDDDDD XXXXSXXXXXXXXXX 14 TTTTTTTTTTTTTTT DDDDDDDDDDDDDDD XXXXXSXXXXXXXXX 15 CCCCCCCCCCCCCCC DDDDDDDDODDDDDD XXXXXXSXXXXXMXX 16 TTTTTTTTTTTTTTT DLDDDDDDDDDDLLD XXXXXXXXXXXXXMX 17 TTTTTTTTTTTTTTT LDLLLLLLLLLLDDL XXXXXXXXXXXXXXX 18 EEEEEEEEEECEEEE LLLLLLLLLLFLLLL XXXXXXXXXXXXXXX 19 EEEEEEEEEEEEEEE LLLLLLLLLLLLLLL

TABLE 16 Particular antisense oligonucleotide variants of SEQ ID NO: 1816 Options for nucleobases, sugar modifications and internucleoside linkages for particular antisense oligonucleotides according to the invention. The options from which the nucleoside at each specific residue # in SEQ ID NO: 1122 can be chosen is shown in each line indicated by that residue #, starting from the 5′-end. The selection of a specific nucleobase (“Nucleobase options for residue #”) and a sugar modification (“Sugar modification options for residue #”) defines the nucleoside at that residue #. The options for the internucleoside linkage between the nucleoside at a specific residue # and the next residue, starting from the 5′-end, is shown in the column entitled “Backbone modification options for internucleoside linkage #”. Residue # Backbone modification in SEQ Nucleobase options  Sugar modification options for residue # ID NO: 1816 for residue # options for residue # (from 5′-end) (from A: (A); C: (C); E: (5meC); D: F: [fR]; L: [LR]; M: [MOPS]; S: [ssP];  5′-end) G: (G); T: (T); U: (U) M: [MOE]; O: [mR] X: [sP]  1 GGGGGGGGGGGG LLLLLLLLLLLL XXXXXXXXXXXX  2 AAAAAAAAAAAA LLLLLLLLLLLL XXXXXXXXXXXX  3 AAAAAAAAAAAA DDDLDDDODDDD XXXXXXXXXXXX  4 TTTTTTTTTTTT DDDDDDDDDDDD XXXXXXXXXXXX  5 EEEEEEEEEEEE LLLLLLLLLLLL XXXXXXXXXXXX  6 TTTTTTTTTTTT DDDDDDDDDDDD XXXXXXXXXXXX  7 TTTTTTTTTTTT LLLLLLLLLLLL XXXXXXXXXXXX  8 AAAAAAAAAAAA LLFLLLOLLLLL XXXXXXXXXXXX  9 TTTTTTTTTTTT DDDDDDDDDDDD XXXXXXXXXXXX 10 TTTTTTTTTTTT DDDDDDDDDDDD XXXXXXXXXXXX 11 TTTTTTTTTTTT DDDDDDDDDDDD XXXXXXXXXXXX 12 AAAAAAAAAAAA DDDDDDDDDDDD SXXXXXXXXXXX 13 CCCCCCCCCCCC DDDDDDDDDDDD XXXXXXXXXXXX 14 AAAAAAAAAAAA DDDDDDDDDDDD XSXXXXXXXXXX 15 TTTTTTTTTTTT DDDDDDDDDDDD XXXXXXXXXXXX 16 EEEEEEEECCEE LLLLLMLLFOLL XXXXXXXXXXXM 17 TTTTTTTTTTUT LLLLMLLLLLFL XXXXXXXXXXXX 18 TTTTTTTTTTTT LLLLLLLLLLLL 

1. An antisense oligonucleotide selected from the group consisting of Compound ID Nos. 1122_91, 1122_107, 1122_154, 1122_155, 1122_156, 1122_157, 1122_158, 1122_167, 1122_172,1122_175, 1122_294, 1122_296, 1122_359, 1122_384, 1122_385, 1816_13, 1816_15, 1816_28, 1816_41, 1816_42, 1816_43, 1816_60, 1816_61, 1816_64, 1816_65, 1816_68, and 1816_92, or a pharmaceutically acceptable salt thereof.
 2. An antisense oligonucleotide according to claim 1 of the following chemical annotation: a. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([mR])U_([sP]).^([dR])(A)_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C)_([sP])._([LR][5me])C (SEQ ID NO:1122, wherein residue 10 is U) (Compound ID No. 1122_91); b. ^([LR])A_([sP]).^([LR])A_([sP]).^([mR])U_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([LR])T_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C (SEQ ID NO:1122, wherein residue 3 is U) (Compound ID No. 1122_107); c. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5m e])C (SEQ ID NO:1122) (Compound ID No. 1122_154); d. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5m e])C (SEQ ID NO:1122) (Compound ID No. 1122_155); e. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR])[5meC]_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C (SEQ ID NO:1122) (Compound ID No. 1122_156); f. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR])[5meC]_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([d R])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C (SEQ ID NO:1122) (Compound ID No. 1122_157); g. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5m e])C (SEQ ID NO:1122) (Compound ID No. 1122_158); h. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([MOE])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5m e])C (SEQ ID NO:1122) (Compound ID No. 1122_167); i. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([mR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5m e])C (SEQ ID NO:1122) (Compound ID No. 1122_172); j. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([mR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5m e])C (SEQ ID NO:1122) (Compound ID No. 1122_175); k. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([fR])C_([sP]).^([LR][5me])C (SEQ ID NO:1122) (Compound ID No. 1122_294); l. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([mR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C (SEQ ID NO:1122) (Compound ID No. 1122_296); m. ^([LR])A_([sP]).^([LR])A_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([MOPS]).^([LR])T_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C (SEQ ID NO:1122) (Compound ID No. 1122_359); n. ^([LR])A_([sP]).^([LR])A_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([LR])T_([MOPS]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C (SEQ ID NO:1122) (Compound ID No. 1122_384); o. ^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([MOPS]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([dR])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR][5me])C_([sP]).^([LR][5me])C (SEQ ID NO:1122) (Compound ID No. 1122_385); p. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_13); q. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_15); r. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP])[fR]A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_28); s. ^([LR])G_([sP]).^([LR])A_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_41); t. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([MOE])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_42); u. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([MOE][5me])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_43); v. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([mR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_60); w. ^([LR])G_([sP]).^([LR])A_([sP]).^([mR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_61); x. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([fR])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_64); y. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([mR])C_([sP]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_65); z. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([fR])U_([sP]).^([LR])T (SEQ ID NO:1816, wherein residue 17 is U) (Compound ID No. 1816_68); or aa. ^([LR])G_([sP]).^([LR])A_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([sP]).^([dR])T_([sP]).^([LR])T_([sP]).^([LR])A_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])T_([sP]).^([dR])A_([sP]).^([dR])C_([sP]).^([dR])A_([sP]).^([dR])T_([sP]).^([LR][5me])C_([MOPS]).^([LR])T_([sP]).^([LR])T (SEQ ID NO:1816) (Compound ID No. 1816_92); or a pharmaceutically acceptable salt thereof, wherein [LR] is a beta-D-oxy-LNA nucleoside, [LR][5me]C is a beta-D-oxy-LNA 5-methyl cytosine nucleoside, [dR] is a DNA nucleoside, [sP] is a phosphorothioate internucleoside linkage (stereo undefined) [ssP] is a stereodefined Sp phosphorothioate internucleoside linkage [MOPS] is a 3-methoxypropylphosphonothioate internucleoside linkage [MOPO] is a 3-methoxypropylphosphonate internucleoside linkage [mR] is a 2′-O-methyl nucleoside, [MOE] is a 2′-O-methoxyethyl nucleoside, and [fR] is a 2′-fluoro nucleoside.
 3. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12A (Compound ID No. 1122_91); or a pharmaceutically acceptable salt thereof.
 4. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12B (Compound ID No. 1122_107); or a pharmaceutically acceptable salt thereof.
 5. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12C (Compound ID No. 1122_154); or a pharmaceutically acceptable salt thereof.
 6. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12D (Compound ID No. 1122_155); or a pharmaceutically acceptable salt thereof.
 7. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12E (Compound ID No. 1122_156); or a pharmaceutically acceptable salt thereof.
 8. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12F (Compound ID No. 1122_157); or a pharmaceutically acceptable salt thereof.
 9. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12G (Compound ID No. 1122_158); or a pharmaceutically acceptable salt thereof.
 10. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12H (Compound ID No. 1122_167); or a pharmaceutically acceptable salt thereof.
 11. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12I (Compound ID No. 1122_172); or a pharmaceutically acceptable salt thereof.
 12. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12J (Compound ID No. 1122_175); or a pharmaceutically acceptable salt thereof.
 13. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12K (Compound ID No. 1122_294); or a pharmaceutically acceptable salt thereof.
 14. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12L (Compound ID No. 1122_296); or a pharmaceutically acceptable salt thereof.
 15. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12M (Compound ID No. 1122_359); or a pharmaceutically acceptable salt thereof.
 16. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12N (Compound ID No. 1122_384); or a pharmaceutically acceptable salt thereof.
 17. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12O (Compound ID No. 1122_385); or a pharmaceutically acceptable salt thereof.
 18. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12P (Compound ID No. 1816_13); or a pharmaceutically acceptable salt thereof.
 19. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12Q (Compound ID No. 1816_15); or a pharmaceutically acceptable salt thereof.
 20. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12R (Compound ID No. 1816_28); or a pharmaceutically acceptable salt thereof.
 21. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12S (Compound ID No. 1816_41); or a pharmaceutically acceptable salt thereof.
 22. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12T (Compound ID No. 1816_42); or a pharmaceutically acceptable salt thereof.
 23. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12U (Compound ID No. 1816_43); or a pharmaceutically acceptable salt thereof.
 24. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12V (Compound ID No. 1816_60); or a pharmaceutically acceptable salt thereof.
 25. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12W (Compound ID No. 1816_61); or a pharmaceutically acceptable salt thereof.
 26. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12X (Compound ID No. 1816_64); or a pharmaceutically acceptable salt thereof.
 27. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12Y (Compound ID No. 1816_65); or a pharmaceutically acceptable salt thereof.
 28. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12Z (Compound ID No. 1816_68); or a pharmaceutically acceptable salt thereof.
 29. The antisense oligonucleotide according to claim 1, which is the antisense oligonucleotide shown in FIG. 12AA (Compound ID No. 1816_92); or a pharmaceutically acceptable salt thereof.
 30. A conjugate comprising an oligonucleotide according to claim 1, and at least one conjugate moiety covalently attached to said oligonucleotide; or a pharmaceutically acceptable salt thereof.
 31. A pharmaceutical composition comprising an oligonucleotide according to claim 1 or a conjugate thereof and a pharmaceutically acceptable diluent, solvent, carrier, salt and/or adjuvant.
 32. An in vivo or in vitro method for modulating ATXN3 expression in a target cell which is expressing ATXN3, said method comprising administering an oligonucleotide selected from a group consisting of Compound ID Nos. 1122_91, 1122_107, 1122_154, 1122_155, 1122_156, 1122_157, 1122_158, 1122_167, 1122_172, 1122_175, 1122_294, 1122_296, 1122_359, 1122_384, 1122_385, 1816_13, 1816_15, 1816_28, 1816_41, 1816_42, 1816_43, 1816_60, 1816_61, 1816_64, 1816_65, 1816_68, and 1816_92, a conjugate, a salt, or a pharmaceutical composition thereof in an effective amount to said cell.
 33. A method for treating or preventing a disease comprising administering a therapeutically or prophylactically effective amount of an oligonucleotide selected from a group consisting of Compound ID Nos. 1122_91, 1122_107, 1122_154, 1122_155, 1122_156, 1122_157, 1122_158, 1122_167, 1122_172, 1122_175, 1122_294, 1122_296, 1122_359, 1122_384, 1122_385, 1816_13, 1816_15, 1816_28, 1816_41, 1816_42, 1816_43, 1816_60, 1816_61, 1816_64, 1816_65 1816_68, and 1816_92, a conjugate, a salt, or a pharmaceutical composition thereof to a subject suffering from or susceptible to the disease.
 34. The method of claim 33, wherein the disease is spinocerebellar ataxia, such as spinocerebellar ataxia 3, such as Machado-Joseph disease
 35. The oligonucleotide, a conjugate, a salt, or a pharmaceutical composition thereof according to claim 1 for use in medicine.
 36. The oligonucleotide, a conjugate, a salt, or a pharmaceutical composition thereof according to claim 1 for use in the treatment or prevention of spinocerebellar ataxia, such as spinocerebellar ataxia 3, such as Machado-Joseph disease, (MJD).
 37. Use of the oligonucleotide, a conjugate, a salt, or a pharmaceutical composition thereof according to claim 1 for the preparation of a medicament for treatment or prevention of spinocerebellar ataxia, such as spinocerebellar ataxia 3, such as Machado-Joseph disease. 